Hb_130389_010

Information

Type -
Description -
Location Contig130389: 7566-10840
Sequence    

Annotation

kegg
ID rcu:RCOM_0802990
description lupus la ribonucleoprotein, putative
nr
ID XP_012077445.1
description PREDICTED: la protein 1 [Jatropha curcas]
swissprot
ID Q93ZV7
description La protein 1 OS=Arabidopsis thaliana GN=LA1 PE=1 SV=1
trembl
ID A0A067KPM5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07781 PE=4 SV=1
Gene Ontology
ID GO:0097159
description la protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_130389_010 0.0 - - PREDICTED: la protein 1 [Jatropha curcas]
2 Hb_007982_050 0.095219025 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Jatropha curcas]
3 Hb_000526_030 0.1013002112 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
4 Hb_004195_120 0.1041675296 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
5 Hb_021530_010 0.1112901173 - - PREDICTED: la protein 1 [Jatropha curcas]
6 Hb_127599_010 0.1129422741 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
7 Hb_004319_070 0.1132455198 - - hypothetical protein RCOM_0852460 [Ricinus communis]
8 Hb_000227_310 0.1171982401 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
9 Hb_004310_040 0.1196913172 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000264_080 0.1198289608 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
11 Hb_000120_420 0.1200147793 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
12 Hb_002016_060 0.1236267354 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
13 Hb_004218_090 0.1253388585 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
14 Hb_029695_020 0.1256229115 - - PREDICTED: inactive beta-amylase 4, chloroplastic [Jatropha curcas]
15 Hb_018301_010 0.1262068586 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
16 Hb_002027_380 0.1265090619 - - PREDICTED: secoisolariciresinol dehydrogenase isoform X2 [Jatropha curcas]
17 Hb_003226_110 0.1281296276 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
18 Hb_008406_040 0.1316709082 - - -
19 Hb_000599_130 0.1334137726 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
20 Hb_000926_010 0.1354662792 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]

Gene co-expression network

sample Hb_130389_010 Hb_130389_010 Hb_007982_050 Hb_007982_050 Hb_130389_010--Hb_007982_050 Hb_000526_030 Hb_000526_030 Hb_130389_010--Hb_000526_030 Hb_004195_120 Hb_004195_120 Hb_130389_010--Hb_004195_120 Hb_021530_010 Hb_021530_010 Hb_130389_010--Hb_021530_010 Hb_127599_010 Hb_127599_010 Hb_130389_010--Hb_127599_010 Hb_004319_070 Hb_004319_070 Hb_130389_010--Hb_004319_070 Hb_077048_010 Hb_077048_010 Hb_007982_050--Hb_077048_010 Hb_001373_160 Hb_001373_160 Hb_007982_050--Hb_001373_160 Hb_002890_100 Hb_002890_100 Hb_007982_050--Hb_002890_100 Hb_008160_030 Hb_008160_030 Hb_007982_050--Hb_008160_030 Hb_000184_150 Hb_000184_150 Hb_007982_050--Hb_000184_150 Hb_000526_030--Hb_004319_070 Hb_005539_020 Hb_005539_020 Hb_000526_030--Hb_005539_020 Hb_000023_350 Hb_000023_350 Hb_000526_030--Hb_000023_350 Hb_000169_170 Hb_000169_170 Hb_000526_030--Hb_000169_170 Hb_012940_040 Hb_012940_040 Hb_000526_030--Hb_012940_040 Hb_002942_110 Hb_002942_110 Hb_004195_120--Hb_002942_110 Hb_000227_310 Hb_000227_310 Hb_004195_120--Hb_000227_310 Hb_005649_090 Hb_005649_090 Hb_004195_120--Hb_005649_090 Hb_003226_110 Hb_003226_110 Hb_004195_120--Hb_003226_110 Hb_004310_040 Hb_004310_040 Hb_004195_120--Hb_004310_040 Hb_004195_120--Hb_004319_070 Hb_005610_080 Hb_005610_080 Hb_021530_010--Hb_005610_080 Hb_006132_040 Hb_006132_040 Hb_021530_010--Hb_006132_040 Hb_004236_030 Hb_004236_030 Hb_021530_010--Hb_004236_030 Hb_005054_310 Hb_005054_310 Hb_021530_010--Hb_005054_310 Hb_003430_030 Hb_003430_030 Hb_021530_010--Hb_003430_030 Hb_004218_090 Hb_004218_090 Hb_127599_010--Hb_004218_090 Hb_000062_080 Hb_000062_080 Hb_127599_010--Hb_000062_080 Hb_127599_010--Hb_000169_170 Hb_006738_050 Hb_006738_050 Hb_127599_010--Hb_006738_050 Hb_000700_060 Hb_000700_060 Hb_127599_010--Hb_000700_060 Hb_006683_040 Hb_006683_040 Hb_127599_010--Hb_006683_040 Hb_009486_160 Hb_009486_160 Hb_004319_070--Hb_009486_160 Hb_004319_070--Hb_000227_310 Hb_004526_010 Hb_004526_010 Hb_004319_070--Hb_004526_010 Hb_000189_630 Hb_000189_630 Hb_004319_070--Hb_000189_630 Hb_011249_060 Hb_011249_060 Hb_004319_070--Hb_011249_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.40014 10.1421 5.28185 2.29581 3.52002 2.87969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.7604 1.3623 0.769791 5.45095 1.14316

CAGE analysis