Hb_000023_350

Information

Type -
Description -
Location Contig23: 559591-561710
Sequence    

Annotation

kegg
ID tcc:TCM_036893
description Major facilitator superfamily protein
nr
ID XP_011031432.1
description PREDICTED: probable folate-biopterin transporter 6 isoform X2 [Populus euphratica]
swissprot
ID Q9LEV7
description Probable folate-biopterin transporter 6 OS=Arabidopsis thaliana GN=At5g10820 PE=2 SV=1
trembl
ID A0A061GIF0
description Major facilitator superfamily protein OS=Theobroma cacao GN=TCM_036893 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable folate-biopterin transporter 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000023_350 0.0 - - PREDICTED: probable folate-biopterin transporter 6 isoform X2 [Populus euphratica]
2 Hb_004319_070 0.0993795253 - - hypothetical protein RCOM_0852460 [Ricinus communis]
3 Hb_000526_030 0.1161093847 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
4 Hb_009486_160 0.1173442572 - - PREDICTED: metacaspase-1 [Jatropha curcas]
5 Hb_029695_020 0.1238243076 - - PREDICTED: inactive beta-amylase 4, chloroplastic [Jatropha curcas]
6 Hb_003711_010 0.1262324528 - - isopropylmalate synthase, putative [Ricinus communis]
7 Hb_000169_170 0.1274793464 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
8 Hb_000008_090 0.1295651158 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
9 Hb_000373_230 0.1309435486 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
10 Hb_000189_630 0.1314808311 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
11 Hb_000512_010 0.1331288204 - - PREDICTED: uncharacterized protein LOC105650728 [Jatropha curcas]
12 Hb_052764_030 0.1352869573 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
13 Hb_000139_320 0.1358644561 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
14 Hb_012940_040 0.1360245129 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
15 Hb_026980_020 0.1364569556 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
16 Hb_002301_170 0.1377202307 - - MAC/Perforin domain-containing protein [Theobroma cacao]
17 Hb_000340_030 0.1381201375 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
18 Hb_002812_010 0.138443473 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]
19 Hb_001396_010 0.1398025021 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
20 Hb_000866_140 0.1401660957 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000023_350 Hb_000023_350 Hb_004319_070 Hb_004319_070 Hb_000023_350--Hb_004319_070 Hb_000526_030 Hb_000526_030 Hb_000023_350--Hb_000526_030 Hb_009486_160 Hb_009486_160 Hb_000023_350--Hb_009486_160 Hb_029695_020 Hb_029695_020 Hb_000023_350--Hb_029695_020 Hb_003711_010 Hb_003711_010 Hb_000023_350--Hb_003711_010 Hb_000169_170 Hb_000169_170 Hb_000023_350--Hb_000169_170 Hb_004319_070--Hb_009486_160 Hb_000227_310 Hb_000227_310 Hb_004319_070--Hb_000227_310 Hb_004526_010 Hb_004526_010 Hb_004319_070--Hb_004526_010 Hb_004195_120 Hb_004195_120 Hb_004319_070--Hb_004195_120 Hb_000189_630 Hb_000189_630 Hb_004319_070--Hb_000189_630 Hb_011249_060 Hb_011249_060 Hb_004319_070--Hb_011249_060 Hb_000526_030--Hb_004319_070 Hb_130389_010 Hb_130389_010 Hb_000526_030--Hb_130389_010 Hb_005539_020 Hb_005539_020 Hb_000526_030--Hb_005539_020 Hb_000526_030--Hb_000169_170 Hb_012940_040 Hb_012940_040 Hb_000526_030--Hb_012940_040 Hb_009486_160--Hb_011249_060 Hb_002812_010 Hb_002812_010 Hb_009486_160--Hb_002812_010 Hb_001862_110 Hb_001862_110 Hb_009486_160--Hb_001862_110 Hb_000363_120 Hb_000363_120 Hb_009486_160--Hb_000363_120 Hb_004899_040 Hb_004899_040 Hb_009486_160--Hb_004899_040 Hb_000926_010 Hb_000926_010 Hb_029695_020--Hb_000926_010 Hb_005542_050 Hb_005542_050 Hb_029695_020--Hb_005542_050 Hb_001047_200 Hb_001047_200 Hb_029695_020--Hb_001047_200 Hb_000823_030 Hb_000823_030 Hb_029695_020--Hb_000823_030 Hb_012114_050 Hb_012114_050 Hb_029695_020--Hb_012114_050 Hb_000556_170 Hb_000556_170 Hb_029695_020--Hb_000556_170 Hb_001723_010 Hb_001723_010 Hb_003711_010--Hb_001723_010 Hb_000340_030 Hb_000340_030 Hb_003711_010--Hb_000340_030 Hb_000684_510 Hb_000684_510 Hb_003711_010--Hb_000684_510 Hb_000373_170 Hb_000373_170 Hb_003711_010--Hb_000373_170 Hb_000139_320 Hb_000139_320 Hb_003711_010--Hb_000139_320 Hb_000661_120 Hb_000661_120 Hb_003711_010--Hb_000661_120 Hb_007054_040 Hb_007054_040 Hb_000169_170--Hb_007054_040 Hb_000009_330 Hb_000009_330 Hb_000169_170--Hb_000009_330 Hb_001541_250 Hb_001541_250 Hb_000169_170--Hb_001541_250 Hb_127599_010 Hb_127599_010 Hb_000169_170--Hb_127599_010 Hb_000862_040 Hb_000862_040 Hb_000169_170--Hb_000862_040 Hb_000169_170--Hb_001862_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.147334 0.45479 0.346883 0.149621 0.235488 0.0607164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.11968 0.117697 0.132863 0.328695 0.0986417

CAGE analysis