Hb_000526_030

Information

Type -
Description -
Location Contig526: 29358-35328
Sequence    

Annotation

kegg
ID rcu:RCOM_1526820
description cohesin subunit rad21, putative
nr
ID XP_012065510.1
description PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
swissprot
ID Q9FQ19
description Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana GN=SYN3 PE=2 SV=2
trembl
ID B9RHH5
description Cohesin subunit rad21, putative OS=Ricinus communis GN=RCOM_1526820 PE=4 SV=1
Gene Ontology
ID GO:0000228
description sister chromatid cohesion 1 protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46986: 29344-31041 , PASA_asmbl_46987: 31243-31993
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000526_030 0.0 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
2 Hb_004319_070 0.1009163192 - - hypothetical protein RCOM_0852460 [Ricinus communis]
3 Hb_130389_010 0.1013002112 - - PREDICTED: la protein 1 [Jatropha curcas]
4 Hb_005539_020 0.1039463194 - - -
5 Hb_000023_350 0.1161093847 - - PREDICTED: probable folate-biopterin transporter 6 isoform X2 [Populus euphratica]
6 Hb_000169_170 0.1190371742 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
7 Hb_012940_040 0.1214001367 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
8 Hb_026980_020 0.1224036692 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
9 Hb_000174_150 0.1279247543 - - stearoyl-acyl-carrier protein desaturase [Ricinus communis]
10 Hb_009486_160 0.1282440934 - - PREDICTED: metacaspase-1 [Jatropha curcas]
11 Hb_002812_010 0.1287770173 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]
12 Hb_127599_010 0.1289010747 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
13 Hb_004195_120 0.130128531 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
14 Hb_029695_020 0.1313789126 - - PREDICTED: inactive beta-amylase 4, chloroplastic [Jatropha curcas]
15 Hb_000802_190 0.1329614057 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
16 Hb_003226_110 0.1351521593 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
17 Hb_000139_320 0.1351655465 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
18 Hb_004319_050 0.1358461804 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
19 Hb_002524_020 0.1363412669 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
20 Hb_000796_120 0.1369134777 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000526_030 Hb_000526_030 Hb_004319_070 Hb_004319_070 Hb_000526_030--Hb_004319_070 Hb_130389_010 Hb_130389_010 Hb_000526_030--Hb_130389_010 Hb_005539_020 Hb_005539_020 Hb_000526_030--Hb_005539_020 Hb_000023_350 Hb_000023_350 Hb_000526_030--Hb_000023_350 Hb_000169_170 Hb_000169_170 Hb_000526_030--Hb_000169_170 Hb_012940_040 Hb_012940_040 Hb_000526_030--Hb_012940_040 Hb_009486_160 Hb_009486_160 Hb_004319_070--Hb_009486_160 Hb_000227_310 Hb_000227_310 Hb_004319_070--Hb_000227_310 Hb_004526_010 Hb_004526_010 Hb_004319_070--Hb_004526_010 Hb_004195_120 Hb_004195_120 Hb_004319_070--Hb_004195_120 Hb_000189_630 Hb_000189_630 Hb_004319_070--Hb_000189_630 Hb_011249_060 Hb_011249_060 Hb_004319_070--Hb_011249_060 Hb_007982_050 Hb_007982_050 Hb_130389_010--Hb_007982_050 Hb_130389_010--Hb_004195_120 Hb_021530_010 Hb_021530_010 Hb_130389_010--Hb_021530_010 Hb_127599_010 Hb_127599_010 Hb_130389_010--Hb_127599_010 Hb_130389_010--Hb_004319_070 Hb_052764_030 Hb_052764_030 Hb_005539_020--Hb_052764_030 Hb_005539_020--Hb_000023_350 Hb_000802_190 Hb_000802_190 Hb_005539_020--Hb_000802_190 Hb_002631_040 Hb_002631_040 Hb_005539_020--Hb_002631_040 Hb_005539_020--Hb_004319_070 Hb_000023_350--Hb_004319_070 Hb_000023_350--Hb_009486_160 Hb_029695_020 Hb_029695_020 Hb_000023_350--Hb_029695_020 Hb_003711_010 Hb_003711_010 Hb_000023_350--Hb_003711_010 Hb_000023_350--Hb_000169_170 Hb_007054_040 Hb_007054_040 Hb_000169_170--Hb_007054_040 Hb_000009_330 Hb_000009_330 Hb_000169_170--Hb_000009_330 Hb_001541_250 Hb_001541_250 Hb_000169_170--Hb_001541_250 Hb_000169_170--Hb_127599_010 Hb_000862_040 Hb_000862_040 Hb_000169_170--Hb_000862_040 Hb_001862_110 Hb_001862_110 Hb_000169_170--Hb_001862_110 Hb_002968_070 Hb_002968_070 Hb_012940_040--Hb_002968_070 Hb_002016_090 Hb_002016_090 Hb_012940_040--Hb_002016_090 Hb_000260_770 Hb_000260_770 Hb_012940_040--Hb_000260_770 Hb_001171_030 Hb_001171_030 Hb_012940_040--Hb_001171_030 Hb_015183_100 Hb_015183_100 Hb_012940_040--Hb_015183_100 Hb_000174_150 Hb_000174_150 Hb_012940_040--Hb_000174_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.420088 1.24396 0.76633 0.37927 0.39191 0.228299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.368795 0.276381 0.105389 0.735308 0.205644

CAGE analysis