Hb_002631_040

Information

Type -
Description -
Location Contig2631: 28955-31959
Sequence    

Annotation

kegg
ID pvu:PHAVU_005G185200g
description hypothetical protein
nr
ID KCW53975.1
description hypothetical protein EUGRSUZ_J03178 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059AKR2
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03178 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27442: 31654-31768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002631_040 0.0 - - hypothetical protein EUGRSUZ_J03178 [Eucalyptus grandis]
2 Hb_001080_140 0.0745928716 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]
3 Hb_000866_090 0.1128704182 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
4 Hb_002301_170 0.1148671664 - - MAC/Perforin domain-containing protein [Theobroma cacao]
5 Hb_001396_010 0.1166772175 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
6 Hb_007765_030 0.119559012 - - PREDICTED: neutral ceramidase [Jatropha curcas]
7 Hb_001104_110 0.1210301139 - - PREDICTED: splicing factor U2af small subunit B-like [Populus euphratica]
8 Hb_002524_020 0.1230683048 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
9 Hb_000345_320 0.125024884 transcription factor TF Family: MYB-related PREDICTED: protein ALWAYS EARLY 2-like isoform X1 [Jatropha curcas]
10 Hb_006501_160 0.1287412306 - - PREDICTED: hexokinase-1-like [Jatropha curcas]
11 Hb_003849_240 0.1300132395 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
12 Hb_082741_010 0.1318363062 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
13 Hb_000008_090 0.1337992417 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
14 Hb_001488_040 0.1346776485 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
15 Hb_001862_110 0.1374953414 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
16 Hb_000009_120 0.1406522279 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
17 Hb_000174_140 0.1422286414 - - JHL23J11.8 [Jatropha curcas]
18 Hb_000622_280 0.1438788179 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
19 Hb_000302_200 0.1450401481 - - ornithine cyclodeaminase, putative [Ricinus communis]
20 Hb_001268_120 0.1450960056 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002631_040 Hb_002631_040 Hb_001080_140 Hb_001080_140 Hb_002631_040--Hb_001080_140 Hb_000866_090 Hb_000866_090 Hb_002631_040--Hb_000866_090 Hb_002301_170 Hb_002301_170 Hb_002631_040--Hb_002301_170 Hb_001396_010 Hb_001396_010 Hb_002631_040--Hb_001396_010 Hb_007765_030 Hb_007765_030 Hb_002631_040--Hb_007765_030 Hb_001104_110 Hb_001104_110 Hb_002631_040--Hb_001104_110 Hb_001080_140--Hb_001396_010 Hb_001080_140--Hb_000866_090 Hb_000622_280 Hb_000622_280 Hb_001080_140--Hb_000622_280 Hb_001080_140--Hb_007765_030 Hb_002524_020 Hb_002524_020 Hb_001080_140--Hb_002524_020 Hb_000645_240 Hb_000645_240 Hb_000866_090--Hb_000645_240 Hb_002471_140 Hb_002471_140 Hb_000866_090--Hb_002471_140 Hb_008667_060 Hb_008667_060 Hb_000866_090--Hb_008667_060 Hb_000802_190 Hb_000802_190 Hb_000866_090--Hb_000802_190 Hb_001699_150 Hb_001699_150 Hb_000866_090--Hb_001699_150 Hb_052764_030 Hb_052764_030 Hb_002301_170--Hb_052764_030 Hb_009486_160 Hb_009486_160 Hb_002301_170--Hb_009486_160 Hb_001439_230 Hb_001439_230 Hb_002301_170--Hb_001439_230 Hb_001862_110 Hb_001862_110 Hb_002301_170--Hb_001862_110 Hb_003711_010 Hb_003711_010 Hb_002301_170--Hb_003711_010 Hb_000363_120 Hb_000363_120 Hb_002301_170--Hb_000363_120 Hb_001396_010--Hb_000622_280 Hb_000866_140 Hb_000866_140 Hb_001396_010--Hb_000866_140 Hb_001396_010--Hb_003711_010 Hb_001396_010--Hb_007765_030 Hb_000174_140 Hb_000174_140 Hb_001396_010--Hb_000174_140 Hb_002217_220 Hb_002217_220 Hb_007765_030--Hb_002217_220 Hb_000260_660 Hb_000260_660 Hb_007765_030--Hb_000260_660 Hb_001414_040 Hb_001414_040 Hb_007765_030--Hb_001414_040 Hb_001341_160 Hb_001341_160 Hb_007765_030--Hb_001341_160 Hb_000220_120 Hb_000220_120 Hb_007765_030--Hb_000220_120 Hb_000834_230 Hb_000834_230 Hb_007765_030--Hb_000834_230 Hb_002641_030 Hb_002641_030 Hb_001104_110--Hb_002641_030 Hb_004934_050 Hb_004934_050 Hb_001104_110--Hb_004934_050 Hb_016734_060 Hb_016734_060 Hb_001104_110--Hb_016734_060 Hb_000631_120 Hb_000631_120 Hb_001104_110--Hb_000631_120 Hb_049436_010 Hb_049436_010 Hb_001104_110--Hb_049436_010 Hb_001031_090 Hb_001031_090 Hb_001104_110--Hb_001031_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.7406 13.7657 6.8836 4.22264 2.4312 2.42517
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.9996 4.00099 2.72707 12.7814 4.1616

CAGE analysis