Hb_077048_010

Information

Type -
Description -
Location Contig77048: 1481-1975
Sequence    

Annotation

kegg
ID rcu:RCOM_1050740
description hypothetical protein
nr
ID XP_002514251.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q53HY2
description Ninja-family protein mc410 OS=Nicotiana tabacum GN=MC410 PE=2 SV=1
trembl
ID B9RKK7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1050740 PE=4 SV=1
Gene Ontology
ID GO:0009867
description ninja-family protein mc410

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_077048_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008160_030 0.1031964312 - - DNA binding protein, putative [Ricinus communis]
3 Hb_002675_110 0.1050431436 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
4 Hb_000352_260 0.1092075219 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
5 Hb_010417_070 0.1106960354 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
6 Hb_000537_140 0.1117734986 - - lupus la ribonucleoprotein, putative [Ricinus communis]
7 Hb_000174_150 0.1122419388 - - stearoyl-acyl-carrier protein desaturase [Ricinus communis]
8 Hb_007982_050 0.1140189718 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Jatropha curcas]
9 Hb_000940_200 0.1166094018 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
10 Hb_000059_020 0.1229703327 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
11 Hb_012940_040 0.1233312369 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
12 Hb_005389_160 0.1241780387 - - PREDICTED: casein kinase I [Jatropha curcas]
13 Hb_005542_050 0.1245245438 - - PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]
14 Hb_000453_150 0.1247676823 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
15 Hb_184798_080 0.1273889907 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
16 Hb_001584_350 0.1274597693 - - hypothetical protein JCGZ_23178 [Jatropha curcas]
17 Hb_005551_020 0.1277511356 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
18 Hb_014231_010 0.1287305862 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
19 Hb_015183_100 0.1292022066 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
20 Hb_000631_120 0.129513987 - - hypothetical protein CISIN_1g0431902mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_077048_010 Hb_077048_010 Hb_008160_030 Hb_008160_030 Hb_077048_010--Hb_008160_030 Hb_002675_110 Hb_002675_110 Hb_077048_010--Hb_002675_110 Hb_000352_260 Hb_000352_260 Hb_077048_010--Hb_000352_260 Hb_010417_070 Hb_010417_070 Hb_077048_010--Hb_010417_070 Hb_000537_140 Hb_000537_140 Hb_077048_010--Hb_000537_140 Hb_000174_150 Hb_000174_150 Hb_077048_010--Hb_000174_150 Hb_008160_030--Hb_000352_260 Hb_000940_200 Hb_000940_200 Hb_008160_030--Hb_000940_200 Hb_009083_070 Hb_009083_070 Hb_008160_030--Hb_009083_070 Hb_000363_400 Hb_000363_400 Hb_008160_030--Hb_000363_400 Hb_145880_010 Hb_145880_010 Hb_008160_030--Hb_145880_010 Hb_184798_080 Hb_184798_080 Hb_008160_030--Hb_184798_080 Hb_002675_110--Hb_184798_080 Hb_005918_010 Hb_005918_010 Hb_002675_110--Hb_005918_010 Hb_007811_050 Hb_007811_050 Hb_002675_110--Hb_007811_050 Hb_002046_110 Hb_002046_110 Hb_002675_110--Hb_002046_110 Hb_001153_190 Hb_001153_190 Hb_002675_110--Hb_001153_190 Hb_000684_510 Hb_000684_510 Hb_002675_110--Hb_000684_510 Hb_000352_260--Hb_000363_400 Hb_000352_260--Hb_010417_070 Hb_000823_030 Hb_000823_030 Hb_000352_260--Hb_000823_030 Hb_000352_260--Hb_009083_070 Hb_001723_010 Hb_001723_010 Hb_000352_260--Hb_001723_010 Hb_005389_160 Hb_005389_160 Hb_010417_070--Hb_005389_160 Hb_060094_020 Hb_060094_020 Hb_010417_070--Hb_060094_020 Hb_003866_080 Hb_003866_080 Hb_010417_070--Hb_003866_080 Hb_001534_210 Hb_001534_210 Hb_010417_070--Hb_001534_210 Hb_004410_070 Hb_004410_070 Hb_010417_070--Hb_004410_070 Hb_002085_030 Hb_002085_030 Hb_010417_070--Hb_002085_030 Hb_054885_020 Hb_054885_020 Hb_000537_140--Hb_054885_020 Hb_004096_070 Hb_004096_070 Hb_000537_140--Hb_004096_070 Hb_000453_150 Hb_000453_150 Hb_000537_140--Hb_000453_150 Hb_002874_090 Hb_002874_090 Hb_000537_140--Hb_002874_090 Hb_061878_010 Hb_061878_010 Hb_000537_140--Hb_061878_010 Hb_001584_350 Hb_001584_350 Hb_000174_150--Hb_001584_350 Hb_000977_300 Hb_000977_300 Hb_000174_150--Hb_000977_300 Hb_000139_320 Hb_000139_320 Hb_000174_150--Hb_000139_320 Hb_005288_140 Hb_005288_140 Hb_000174_150--Hb_005288_140 Hb_001171_030 Hb_001171_030 Hb_000174_150--Hb_001171_030 Hb_000340_030 Hb_000340_030 Hb_000174_150--Hb_000340_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.3373 52.8676 31.5907 21.4842 10.8506 27.4481
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.8734 11.4701 15.9479 42.5542 13.3966

CAGE analysis