Hb_054885_020

Information

Type -
Description -
Location Contig54885: 4492-6934
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48143: 5897-6749
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054885_020 0.0 - - -
2 Hb_002375_110 0.0930932616 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
3 Hb_001034_070 0.1166843206 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_008143_070 0.1178380538 - - PREDICTED: factor of DNA methylation 4 [Jatropha curcas]
5 Hb_005260_040 0.1195759891 - - PREDICTED: uncharacterized protein LOC105633768 isoform X1 [Jatropha curcas]
6 Hb_004040_040 0.120011358 desease resistance Gene Name: ABC_tran hypothetical protein POPTR_0006s07370g [Populus trichocarpa]
7 Hb_000537_140 0.1242809745 - - lupus la ribonucleoprotein, putative [Ricinus communis]
8 Hb_063480_020 0.1317122401 - - unnamed protein product [Vitis vinifera]
9 Hb_061878_010 0.1331569015 - - hypothetical protein CISIN_1g0094072mg, partial [Citrus sinensis]
10 Hb_143960_010 0.1344894088 - - -
11 Hb_011671_230 0.1356695867 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007186_020 0.1393712039 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
13 Hb_012184_060 0.1405934206 - - PREDICTED: nuclear pore complex protein NUP1 isoform X1 [Jatropha curcas]
14 Hb_000158_130 0.140782168 - - PREDICTED: uncharacterized protein LOC105647950 isoform X1 [Jatropha curcas]
15 Hb_030736_070 0.1426656151 - - PREDICTED: general transcription factor IIH subunit 3 isoform X2 [Jatropha curcas]
16 Hb_011287_050 0.1441058277 - - PREDICTED: uncharacterized protein LOC105644786 [Jatropha curcas]
17 Hb_000120_520 0.145550699 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
18 Hb_000521_170 0.146191727 - - PREDICTED: callose synthase 1 [Jatropha curcas]
19 Hb_003177_060 0.1462611887 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X1 [Jatropha curcas]
20 Hb_011287_080 0.1467448256 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_054885_020 Hb_054885_020 Hb_002375_110 Hb_002375_110 Hb_054885_020--Hb_002375_110 Hb_001034_070 Hb_001034_070 Hb_054885_020--Hb_001034_070 Hb_008143_070 Hb_008143_070 Hb_054885_020--Hb_008143_070 Hb_005260_040 Hb_005260_040 Hb_054885_020--Hb_005260_040 Hb_004040_040 Hb_004040_040 Hb_054885_020--Hb_004040_040 Hb_000537_140 Hb_000537_140 Hb_054885_020--Hb_000537_140 Hb_000176_130 Hb_000176_130 Hb_002375_110--Hb_000176_130 Hb_061878_010 Hb_061878_010 Hb_002375_110--Hb_061878_010 Hb_009367_080 Hb_009367_080 Hb_002375_110--Hb_009367_080 Hb_001989_050 Hb_001989_050 Hb_002375_110--Hb_001989_050 Hb_028472_010 Hb_028472_010 Hb_002375_110--Hb_028472_010 Hb_000369_130 Hb_000369_130 Hb_001034_070--Hb_000369_130 Hb_000613_080 Hb_000613_080 Hb_001034_070--Hb_000613_080 Hb_003916_010 Hb_003916_010 Hb_001034_070--Hb_003916_010 Hb_000158_100 Hb_000158_100 Hb_001034_070--Hb_000158_100 Hb_006355_090 Hb_006355_090 Hb_001034_070--Hb_006355_090 Hb_001617_060 Hb_001617_060 Hb_001034_070--Hb_001617_060 Hb_001055_030 Hb_001055_030 Hb_008143_070--Hb_001055_030 Hb_000622_250 Hb_000622_250 Hb_008143_070--Hb_000622_250 Hb_005143_030 Hb_005143_030 Hb_008143_070--Hb_005143_030 Hb_003498_120 Hb_003498_120 Hb_008143_070--Hb_003498_120 Hb_001318_020 Hb_001318_020 Hb_008143_070--Hb_001318_020 Hb_004668_060 Hb_004668_060 Hb_008143_070--Hb_004668_060 Hb_005725_170 Hb_005725_170 Hb_005260_040--Hb_005725_170 Hb_000158_130 Hb_000158_130 Hb_005260_040--Hb_000158_130 Hb_011671_230 Hb_011671_230 Hb_005260_040--Hb_011671_230 Hb_003529_130 Hb_003529_130 Hb_005260_040--Hb_003529_130 Hb_003388_100 Hb_003388_100 Hb_005260_040--Hb_003388_100 Hb_000120_620 Hb_000120_620 Hb_005260_040--Hb_000120_620 Hb_002370_030 Hb_002370_030 Hb_004040_040--Hb_002370_030 Hb_027136_010 Hb_027136_010 Hb_004040_040--Hb_027136_010 Hb_030736_070 Hb_030736_070 Hb_004040_040--Hb_030736_070 Hb_150346_010 Hb_150346_010 Hb_004040_040--Hb_150346_010 Hb_007186_020 Hb_007186_020 Hb_004040_040--Hb_007186_020 Hb_077048_010 Hb_077048_010 Hb_000537_140--Hb_077048_010 Hb_004096_070 Hb_004096_070 Hb_000537_140--Hb_004096_070 Hb_000453_150 Hb_000453_150 Hb_000537_140--Hb_000453_150 Hb_002874_090 Hb_002874_090 Hb_000537_140--Hb_002874_090 Hb_000537_140--Hb_061878_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.3277 45.176 12.2683 26.1323 20.8282 46.4194
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.34367 5.4302 10.2329 38.8229 10.9067

CAGE analysis