Hb_028472_010

Information

Type -
Description -
Location Contig28472: 1730-2932
Sequence    

Annotation

kegg
ID rcu:RCOM_1653010
description glycosyltransferase, putative
nr
ID XP_002516632.1
description glycosyltransferase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RSB3
description Glycosyltransferase, putative OS=Ricinus communis GN=RCOM_1653010 PE=4 SV=1
Gene Ontology
ID GO:0016740
description udp-glycosyltransferase superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29774: 1587-1998 , PASA_asmbl_29776: 2424-2593 , PASA_asmbl_29777: 2607-2983
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028472_010 0.0 - - glycosyltransferase, putative [Ricinus communis]
2 Hb_009367_080 0.0844073013 transcription factor TF Family: WRKY WRKY transcription factor 42 [Jatropha curcas]
3 Hb_002375_110 0.1033223332 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
4 Hb_005563_060 0.1130851185 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
5 Hb_000836_020 0.120821547 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
6 Hb_000037_220 0.123791528 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
7 Hb_011242_060 0.1258696597 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
8 Hb_003939_040 0.126830807 - - hypothetical protein CICLE_v10014350mg [Citrus clementina]
9 Hb_003014_030 0.1272645842 - - PREDICTED: thyroid adenoma-associated protein homolog [Jatropha curcas]
10 Hb_001935_160 0.1285936271 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
11 Hb_003805_040 0.1301864746 - - Sacsin [Glycine soja]
12 Hb_000941_030 0.1309175577 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
13 Hb_008103_020 0.131402821 - - hypothetical protein POPTR_0003s20310g [Populus trichocarpa]
14 Hb_000487_380 0.1336820837 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
15 Hb_000176_130 0.1342307781 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
16 Hb_002391_050 0.135373866 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
17 Hb_061878_010 0.1353908665 - - hypothetical protein CISIN_1g0094072mg, partial [Citrus sinensis]
18 Hb_006185_060 0.1355257173 - - PREDICTED: protein phosphatase 2C 16 [Jatropha curcas]
19 Hb_000574_420 0.1365960308 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
20 Hb_000635_200 0.137717815 rubber biosynthesis Gene Name: SRPP5 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]

Gene co-expression network

sample Hb_028472_010 Hb_028472_010 Hb_009367_080 Hb_009367_080 Hb_028472_010--Hb_009367_080 Hb_002375_110 Hb_002375_110 Hb_028472_010--Hb_002375_110 Hb_005563_060 Hb_005563_060 Hb_028472_010--Hb_005563_060 Hb_000836_020 Hb_000836_020 Hb_028472_010--Hb_000836_020 Hb_000037_220 Hb_000037_220 Hb_028472_010--Hb_000037_220 Hb_011242_060 Hb_011242_060 Hb_028472_010--Hb_011242_060 Hb_009367_080--Hb_000037_220 Hb_061878_010 Hb_061878_010 Hb_009367_080--Hb_061878_010 Hb_009367_080--Hb_005563_060 Hb_009367_080--Hb_002375_110 Hb_000256_020 Hb_000256_020 Hb_009367_080--Hb_000256_020 Hb_000176_130 Hb_000176_130 Hb_002375_110--Hb_000176_130 Hb_002375_110--Hb_061878_010 Hb_054885_020 Hb_054885_020 Hb_002375_110--Hb_054885_020 Hb_001989_050 Hb_001989_050 Hb_002375_110--Hb_001989_050 Hb_005563_060--Hb_000037_220 Hb_000003_100 Hb_000003_100 Hb_005563_060--Hb_000003_100 Hb_001377_350 Hb_001377_350 Hb_005563_060--Hb_001377_350 Hb_003216_090 Hb_003216_090 Hb_005563_060--Hb_003216_090 Hb_000665_230 Hb_000665_230 Hb_005563_060--Hb_000665_230 Hb_012092_060 Hb_012092_060 Hb_005563_060--Hb_012092_060 Hb_003581_170 Hb_003581_170 Hb_000836_020--Hb_003581_170 Hb_000836_020--Hb_011242_060 Hb_001699_280 Hb_001699_280 Hb_000836_020--Hb_001699_280 Hb_000265_090 Hb_000265_090 Hb_000836_020--Hb_000265_090 Hb_000703_130 Hb_000703_130 Hb_000836_020--Hb_000703_130 Hb_188063_010 Hb_188063_010 Hb_000836_020--Hb_188063_010 Hb_000556_220 Hb_000556_220 Hb_000037_220--Hb_000556_220 Hb_000037_220--Hb_000003_100 Hb_140049_080 Hb_140049_080 Hb_000037_220--Hb_140049_080 Hb_000094_310 Hb_000094_310 Hb_000037_220--Hb_000094_310 Hb_041327_010 Hb_041327_010 Hb_000037_220--Hb_041327_010 Hb_000069_470 Hb_000069_470 Hb_011242_060--Hb_000069_470 Hb_011242_060--Hb_003581_170 Hb_011242_060--Hb_000265_090 Hb_003729_030 Hb_003729_030 Hb_011242_060--Hb_003729_030 Hb_000321_150 Hb_000321_150 Hb_011242_060--Hb_000321_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.56979 3.76191 1.08801 2.22268 1.06016 2.61963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.323596 0.54091 1.36156 2.3834 2.10748

CAGE analysis