Hb_009367_080

Information

Type transcription factor
Description TF Family: WRKY
Location Contig9367: 70184-71691
Sequence    

Annotation

kegg
ID rcu:RCOM_1589480
description WRKY transcription factor, putative
nr
ID AGQ04232.1
description WRKY transcription factor 42 [Jatropha curcas]
swissprot
ID Q9STX0
description Probable WRKY transcription factor 7 OS=Arabidopsis thaliana GN=WRKY7 PE=2 SV=1
trembl
ID S5CS78
description Uncharacterized protein OS=Jatropha curcas GN=WRKY42 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63008: 69926-71627
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009367_080 0.0 transcription factor TF Family: WRKY WRKY transcription factor 42 [Jatropha curcas]
2 Hb_028472_010 0.0844073013 - - glycosyltransferase, putative [Ricinus communis]
3 Hb_000037_220 0.0876350584 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
4 Hb_061878_010 0.0926261438 - - hypothetical protein CISIN_1g0094072mg, partial [Citrus sinensis]
5 Hb_005563_060 0.0933955857 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
6 Hb_002375_110 0.0948834264 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
7 Hb_000256_020 0.098420319 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
8 Hb_000941_030 0.0991074122 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
9 Hb_001935_160 0.1070243281 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
10 Hb_140049_080 0.1071573598 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
11 Hb_012092_060 0.1110461326 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
12 Hb_001754_040 0.1115741856 transcription factor TF Family: TRAF PREDICTED: uncharacterized protein LOC105643434 [Jatropha curcas]
13 Hb_000574_420 0.1117316805 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
14 Hb_000120_660 0.1121339771 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
15 Hb_008103_020 0.1141817755 - - hypothetical protein POPTR_0003s20310g [Populus trichocarpa]
16 Hb_005357_260 0.1149754458 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
17 Hb_000088_050 0.1153261242 - - PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase [Jatropha curcas]
18 Hb_000184_150 0.115952811 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
19 Hb_006185_060 0.1159957473 - - PREDICTED: protein phosphatase 2C 16 [Jatropha curcas]
20 Hb_000094_310 0.1169732399 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]

Gene co-expression network

sample Hb_009367_080 Hb_009367_080 Hb_028472_010 Hb_028472_010 Hb_009367_080--Hb_028472_010 Hb_000037_220 Hb_000037_220 Hb_009367_080--Hb_000037_220 Hb_061878_010 Hb_061878_010 Hb_009367_080--Hb_061878_010 Hb_005563_060 Hb_005563_060 Hb_009367_080--Hb_005563_060 Hb_002375_110 Hb_002375_110 Hb_009367_080--Hb_002375_110 Hb_000256_020 Hb_000256_020 Hb_009367_080--Hb_000256_020 Hb_028472_010--Hb_002375_110 Hb_028472_010--Hb_005563_060 Hb_000836_020 Hb_000836_020 Hb_028472_010--Hb_000836_020 Hb_028472_010--Hb_000037_220 Hb_011242_060 Hb_011242_060 Hb_028472_010--Hb_011242_060 Hb_000037_220--Hb_005563_060 Hb_000556_220 Hb_000556_220 Hb_000037_220--Hb_000556_220 Hb_000003_100 Hb_000003_100 Hb_000037_220--Hb_000003_100 Hb_140049_080 Hb_140049_080 Hb_000037_220--Hb_140049_080 Hb_000094_310 Hb_000094_310 Hb_000037_220--Hb_000094_310 Hb_041327_010 Hb_041327_010 Hb_000037_220--Hb_041327_010 Hb_061878_010--Hb_140049_080 Hb_006355_090 Hb_006355_090 Hb_061878_010--Hb_006355_090 Hb_004109_370 Hb_004109_370 Hb_061878_010--Hb_004109_370 Hb_000139_130 Hb_000139_130 Hb_061878_010--Hb_000139_130 Hb_012092_060 Hb_012092_060 Hb_061878_010--Hb_012092_060 Hb_061878_010--Hb_000037_220 Hb_005563_060--Hb_000003_100 Hb_001377_350 Hb_001377_350 Hb_005563_060--Hb_001377_350 Hb_003216_090 Hb_003216_090 Hb_005563_060--Hb_003216_090 Hb_000665_230 Hb_000665_230 Hb_005563_060--Hb_000665_230 Hb_005563_060--Hb_012092_060 Hb_000176_130 Hb_000176_130 Hb_002375_110--Hb_000176_130 Hb_002375_110--Hb_061878_010 Hb_054885_020 Hb_054885_020 Hb_002375_110--Hb_054885_020 Hb_001989_050 Hb_001989_050 Hb_002375_110--Hb_001989_050 Hb_001723_140 Hb_001723_140 Hb_000256_020--Hb_001723_140 Hb_088144_020 Hb_088144_020 Hb_000256_020--Hb_088144_020 Hb_004064_050 Hb_004064_050 Hb_000256_020--Hb_004064_050 Hb_000184_150 Hb_000184_150 Hb_000256_020--Hb_000184_150 Hb_002045_250 Hb_002045_250 Hb_000256_020--Hb_002045_250 Hb_001171_030 Hb_001171_030 Hb_000256_020--Hb_001171_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.8496 44.6797 22.231 25.3021 17.6197 33.3224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.8904 5.61585 23.3321 36.2251 23.3865

CAGE analysis