Hb_007186_020

Information

Type -
Description -
Location Contig7186: 13497-18205
Sequence    

Annotation

kegg
ID rcu:RCOM_0807900
description dead box ATP-dependent RNA helicase, putative
nr
ID KHG11766.1
description Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
swissprot
ID P41380
description Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia PE=2 SV=1
trembl
ID A0A0B0NL15
description Eukaryotic initiation factor 4A-3 OS=Gossypium arboreum GN=F383_01099 PE=4 SV=1
Gene Ontology
ID GO:0003743
description eukaryotic initiation factor 4a-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55526: 13519-18094
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007186_020 0.0 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
2 Hb_010021_030 0.088786397 - - PREDICTED: pre-mRNA-processing protein 40A isoform X4 [Jatropha curcas]
3 Hb_001860_040 0.0998945814 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X4 [Jatropha curcas]
4 Hb_011202_020 0.1013761206 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
5 Hb_000680_110 0.1033150376 - - Endosomal P24A protein precursor, putative [Ricinus communis]
6 Hb_007426_130 0.1034502946 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
7 Hb_000291_090 0.1047760354 - - PREDICTED: beta-1,3-galactosyltransferase 7 isoform X2 [Jatropha curcas]
8 Hb_000237_140 0.1085293128 - - PREDICTED: RNA-binding protein 28 [Jatropha curcas]
9 Hb_003939_040 0.1086570498 - - hypothetical protein CICLE_v10014350mg [Citrus clementina]
10 Hb_004228_100 0.1089424528 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
11 Hb_002284_250 0.109118773 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
12 Hb_001034_070 0.1093368601 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_004531_120 0.1093516615 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
14 Hb_061878_010 0.1111036638 - - hypothetical protein CISIN_1g0094072mg, partial [Citrus sinensis]
15 Hb_002044_170 0.1119735579 - - hypothetical protein POPTR_0014s17160g [Populus trichocarpa]
16 Hb_000261_240 0.1128562103 - - RecName: Full=Elongation factor 1-alpha; Short=EF-1-alpha [Manihot esculenta]
17 Hb_008484_010 0.1129896598 - - hypothetical protein B456_008G050700 [Gossypium raimondii]
18 Hb_000261_030 0.1132763997 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
19 Hb_001195_320 0.1135738896 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
20 Hb_011287_080 0.1137797835 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007186_020 Hb_007186_020 Hb_010021_030 Hb_010021_030 Hb_007186_020--Hb_010021_030 Hb_001860_040 Hb_001860_040 Hb_007186_020--Hb_001860_040 Hb_011202_020 Hb_011202_020 Hb_007186_020--Hb_011202_020 Hb_000680_110 Hb_000680_110 Hb_007186_020--Hb_000680_110 Hb_007426_130 Hb_007426_130 Hb_007186_020--Hb_007426_130 Hb_000291_090 Hb_000291_090 Hb_007186_020--Hb_000291_090 Hb_000062_020 Hb_000062_020 Hb_010021_030--Hb_000062_020 Hb_004228_100 Hb_004228_100 Hb_010021_030--Hb_004228_100 Hb_000270_030 Hb_000270_030 Hb_010021_030--Hb_000270_030 Hb_000261_240 Hb_000261_240 Hb_010021_030--Hb_000261_240 Hb_008484_060 Hb_008484_060 Hb_010021_030--Hb_008484_060 Hb_001195_320 Hb_001195_320 Hb_001860_040--Hb_001195_320 Hb_021297_050 Hb_021297_050 Hb_001860_040--Hb_021297_050 Hb_002329_040 Hb_002329_040 Hb_001860_040--Hb_002329_040 Hb_001860_040--Hb_007426_130 Hb_001343_040 Hb_001343_040 Hb_001860_040--Hb_001343_040 Hb_012053_080 Hb_012053_080 Hb_001860_040--Hb_012053_080 Hb_001235_230 Hb_001235_230 Hb_011202_020--Hb_001235_230 Hb_005402_040 Hb_005402_040 Hb_011202_020--Hb_005402_040 Hb_003124_160 Hb_003124_160 Hb_011202_020--Hb_003124_160 Hb_005357_260 Hb_005357_260 Hb_011202_020--Hb_005357_260 Hb_000261_030 Hb_000261_030 Hb_011202_020--Hb_000261_030 Hb_009486_170 Hb_009486_170 Hb_011202_020--Hb_009486_170 Hb_004531_120 Hb_004531_120 Hb_000680_110--Hb_004531_120 Hb_001195_470 Hb_001195_470 Hb_000680_110--Hb_001195_470 Hb_000723_220 Hb_000723_220 Hb_000680_110--Hb_000723_220 Hb_000264_350 Hb_000264_350 Hb_000680_110--Hb_000264_350 Hb_000230_260 Hb_000230_260 Hb_000680_110--Hb_000230_260 Hb_002902_080 Hb_002902_080 Hb_000680_110--Hb_002902_080 Hb_000922_370 Hb_000922_370 Hb_007426_130--Hb_000922_370 Hb_007426_130--Hb_002329_040 Hb_009615_170 Hb_009615_170 Hb_007426_130--Hb_009615_170 Hb_000183_020 Hb_000183_020 Hb_007426_130--Hb_000183_020 Hb_001821_090 Hb_001821_090 Hb_007426_130--Hb_001821_090 Hb_007426_130--Hb_000261_030 Hb_001054_030 Hb_001054_030 Hb_000291_090--Hb_001054_030 Hb_000453_060 Hb_000453_060 Hb_000291_090--Hb_000453_060 Hb_032808_030 Hb_032808_030 Hb_000291_090--Hb_032808_030 Hb_000009_500 Hb_000009_500 Hb_000291_090--Hb_000009_500 Hb_002006_040 Hb_002006_040 Hb_000291_090--Hb_002006_040 Hb_002960_080 Hb_002960_080 Hb_000291_090--Hb_002960_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.3865 94.7511 41.164 81.2585 77.7081 123.706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.0482 30.4754 41.0698 77.1019 53.8298

CAGE analysis