Hb_010021_030

Information

Type -
Description -
Location Contig10021: 38200-47659
Sequence    

Annotation

kegg
ID rcu:RCOM_1586470
description protein binding protein, putative
nr
ID XP_012068173.1
description PREDICTED: pre-mRNA-processing protein 40A isoform X4 [Jatropha curcas]
swissprot
ID B6EUA9
description Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A PE=1 SV=1
trembl
ID A0A067KZF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15993 PE=4 SV=1
Gene Ontology
ID GO:0044424
description pre-mrna-processing protein 40a isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00255: 29532-37750 , PASA_asmbl_00256: 42193-44450 , PASA_asmbl_00257: 45962-46173 , PASA_asmbl_00258: 47283-47957
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010021_030 0.0 - - PREDICTED: pre-mRNA-processing protein 40A isoform X4 [Jatropha curcas]
2 Hb_007186_020 0.088786397 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
3 Hb_000062_020 0.0966167483 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_004228_100 0.0999384235 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
5 Hb_000270_030 0.1072533968 transcription factor TF Family: HB hypothetical protein POPTR_0015s07640g [Populus trichocarpa]
6 Hb_000261_240 0.1072874119 - - RecName: Full=Elongation factor 1-alpha; Short=EF-1-alpha [Manihot esculenta]
7 Hb_008484_060 0.1078050246 - - PREDICTED: allantoate deiminase isoform X3 [Populus euphratica]
8 Hb_004204_130 0.1086256699 - - PREDICTED: uncharacterized protein LOC103930912 [Pyrus x bretschneideri]
9 Hb_007253_020 0.1092019147 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
10 Hb_011849_040 0.1101220244 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_005765_010 0.1111652321 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 isoform X1 [Jatropha curcas]
12 Hb_002284_250 0.1144041625 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
13 Hb_159558_010 0.1148283964 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
14 Hb_012286_040 0.1151150454 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
15 Hb_001188_020 0.1163966333 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X1 [Jatropha curcas]
16 Hb_000453_060 0.1167778232 - - PREDICTED: pentatricopeptide repeat-containing protein At4g11690 [Jatropha curcas]
17 Hb_000479_240 0.1180751644 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
18 Hb_011231_020 0.1182614012 - - PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 isoform X2 [Jatropha curcas]
19 Hb_009976_020 0.1183451925 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
20 Hb_000962_030 0.1186205048 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]

Gene co-expression network

sample Hb_010021_030 Hb_010021_030 Hb_007186_020 Hb_007186_020 Hb_010021_030--Hb_007186_020 Hb_000062_020 Hb_000062_020 Hb_010021_030--Hb_000062_020 Hb_004228_100 Hb_004228_100 Hb_010021_030--Hb_004228_100 Hb_000270_030 Hb_000270_030 Hb_010021_030--Hb_000270_030 Hb_000261_240 Hb_000261_240 Hb_010021_030--Hb_000261_240 Hb_008484_060 Hb_008484_060 Hb_010021_030--Hb_008484_060 Hb_001860_040 Hb_001860_040 Hb_007186_020--Hb_001860_040 Hb_011202_020 Hb_011202_020 Hb_007186_020--Hb_011202_020 Hb_000680_110 Hb_000680_110 Hb_007186_020--Hb_000680_110 Hb_007426_130 Hb_007426_130 Hb_007186_020--Hb_007426_130 Hb_000291_090 Hb_000291_090 Hb_007186_020--Hb_000291_090 Hb_001442_060 Hb_001442_060 Hb_000062_020--Hb_001442_060 Hb_002284_250 Hb_002284_250 Hb_000062_020--Hb_002284_250 Hb_004109_230 Hb_004109_230 Hb_000062_020--Hb_004109_230 Hb_004531_120 Hb_004531_120 Hb_000062_020--Hb_004531_120 Hb_001109_060 Hb_001109_060 Hb_000062_020--Hb_001109_060 Hb_012760_100 Hb_012760_100 Hb_000062_020--Hb_012760_100 Hb_007253_020 Hb_007253_020 Hb_004228_100--Hb_007253_020 Hb_004228_100--Hb_007186_020 Hb_043362_010 Hb_043362_010 Hb_004228_100--Hb_043362_010 Hb_068575_010 Hb_068575_010 Hb_004228_100--Hb_068575_010 Hb_003805_040 Hb_003805_040 Hb_004228_100--Hb_003805_040 Hb_003943_010 Hb_003943_010 Hb_000270_030--Hb_003943_010 Hb_001946_340 Hb_001946_340 Hb_000270_030--Hb_001946_340 Hb_006520_040 Hb_006520_040 Hb_000270_030--Hb_006520_040 Hb_002864_010 Hb_002864_010 Hb_000270_030--Hb_002864_010 Hb_013399_070 Hb_013399_070 Hb_000270_030--Hb_013399_070 Hb_021374_010 Hb_021374_010 Hb_000270_030--Hb_021374_010 Hb_007657_020 Hb_007657_020 Hb_000261_240--Hb_007657_020 Hb_000089_120 Hb_000089_120 Hb_000261_240--Hb_000089_120 Hb_002311_290 Hb_002311_290 Hb_000261_240--Hb_002311_290 Hb_000398_080 Hb_000398_080 Hb_000261_240--Hb_000398_080 Hb_005460_050 Hb_005460_050 Hb_000261_240--Hb_005460_050 Hb_005723_020 Hb_005723_020 Hb_000261_240--Hb_005723_020 Hb_009976_020 Hb_009976_020 Hb_008484_060--Hb_009976_020 Hb_003734_010 Hb_003734_010 Hb_008484_060--Hb_003734_010 Hb_000830_030 Hb_000830_030 Hb_008484_060--Hb_000830_030 Hb_008484_060--Hb_012760_100 Hb_011231_020 Hb_011231_020 Hb_008484_060--Hb_011231_020 Hb_056691_060 Hb_056691_060 Hb_008484_060--Hb_056691_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.323827 0.788975 0.381594 0.765677 0.458333 1.01277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.222705 0.475561 0.281977 0.65954 0.575602

CAGE analysis