Hb_007253_020

Information

Type -
Description -
Location Contig7253: 15167-25564
Sequence    

Annotation

kegg
ID gmx:100814321
description putative deoxyribonuclease TATDN1-like
nr
ID XP_012074297.1
description PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
swissprot
ID Q640V9
description Putative deoxyribonuclease TATDN1 OS=Xenopus laevis GN=tatdn1 PE=2 SV=1
trembl
ID A0A0B2SA28
description Putative deoxyribonuclease TATDN1 OS=Glycine soja GN=glysoja_002189 PE=4 SV=1
Gene Ontology
ID GO:0016888
description deoxyribonuclease tatdn1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007253_020 0.0 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
2 Hb_000066_150 0.0839136685 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
3 Hb_004228_100 0.0892536854 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
4 Hb_001381_050 0.0892912804 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
5 Hb_000088_050 0.0906352818 - - PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase [Jatropha curcas]
6 Hb_010315_020 0.0935855837 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
7 Hb_092000_010 0.0955228092 - - kelch repeat-containing F-box family protein [Populus trichocarpa]
8 Hb_012092_060 0.1022703359 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
9 Hb_004204_130 0.1026264261 - - PREDICTED: uncharacterized protein LOC103930912 [Pyrus x bretschneideri]
10 Hb_007994_010 0.1059058123 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 [Jatropha curcas]
11 Hb_003805_040 0.1062636853 - - Sacsin [Glycine soja]
12 Hb_005563_060 0.1070424512 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
13 Hb_001085_290 0.1073887626 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
14 Hb_008014_040 0.1077085378 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
15 Hb_000027_050 0.1085928306 - - PREDICTED: uncharacterized protein LOC105636933 isoform X1 [Jatropha curcas]
16 Hb_010021_030 0.1092019147 - - PREDICTED: pre-mRNA-processing protein 40A isoform X4 [Jatropha curcas]
17 Hb_002007_110 0.1093070672 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
18 Hb_001935_160 0.1093574848 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
19 Hb_043362_010 0.1121649825 - - hypothetical protein JCGZ_23765 [Jatropha curcas]
20 Hb_012286_040 0.1122125641 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]

Gene co-expression network

sample Hb_007253_020 Hb_007253_020 Hb_000066_150 Hb_000066_150 Hb_007253_020--Hb_000066_150 Hb_004228_100 Hb_004228_100 Hb_007253_020--Hb_004228_100 Hb_001381_050 Hb_001381_050 Hb_007253_020--Hb_001381_050 Hb_000088_050 Hb_000088_050 Hb_007253_020--Hb_000088_050 Hb_010315_020 Hb_010315_020 Hb_007253_020--Hb_010315_020 Hb_092000_010 Hb_092000_010 Hb_007253_020--Hb_092000_010 Hb_012055_110 Hb_012055_110 Hb_000066_150--Hb_012055_110 Hb_002007_110 Hb_002007_110 Hb_000066_150--Hb_002007_110 Hb_000066_150--Hb_010315_020 Hb_000358_220 Hb_000358_220 Hb_000066_150--Hb_000358_220 Hb_000172_340 Hb_000172_340 Hb_000066_150--Hb_000172_340 Hb_004032_200 Hb_004032_200 Hb_000066_150--Hb_004032_200 Hb_010021_030 Hb_010021_030 Hb_004228_100--Hb_010021_030 Hb_007186_020 Hb_007186_020 Hb_004228_100--Hb_007186_020 Hb_043362_010 Hb_043362_010 Hb_004228_100--Hb_043362_010 Hb_068575_010 Hb_068575_010 Hb_004228_100--Hb_068575_010 Hb_003805_040 Hb_003805_040 Hb_004228_100--Hb_003805_040 Hb_007994_010 Hb_007994_010 Hb_001381_050--Hb_007994_010 Hb_001085_290 Hb_001085_290 Hb_001381_050--Hb_001085_290 Hb_005402_040 Hb_005402_040 Hb_001381_050--Hb_005402_040 Hb_001381_050--Hb_000066_150 Hb_001381_050--Hb_000088_050 Hb_001341_180 Hb_001341_180 Hb_001381_050--Hb_001341_180 Hb_000088_050--Hb_001085_290 Hb_085742_010 Hb_085742_010 Hb_000088_050--Hb_085742_010 Hb_000017_230 Hb_000017_230 Hb_000088_050--Hb_000017_230 Hb_001377_350 Hb_001377_350 Hb_000088_050--Hb_001377_350 Hb_000088_050--Hb_092000_010 Hb_000212_420 Hb_000212_420 Hb_010315_020--Hb_000212_420 Hb_008014_040 Hb_008014_040 Hb_010315_020--Hb_008014_040 Hb_000588_080 Hb_000588_080 Hb_010315_020--Hb_000588_080 Hb_001776_020 Hb_001776_020 Hb_010315_020--Hb_001776_020 Hb_044486_020 Hb_044486_020 Hb_010315_020--Hb_044486_020 Hb_092000_010--Hb_000017_230 Hb_002045_250 Hb_002045_250 Hb_092000_010--Hb_002045_250 Hb_001935_160 Hb_001935_160 Hb_092000_010--Hb_001935_160 Hb_092000_010--Hb_001085_290 Hb_092000_010--Hb_085742_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.670864 1.39857 0.967903 1.2418 0.535105 1.64956
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.350797 0.379402 0.575472 1.07906 1.28003

CAGE analysis