Hb_004228_100

Information

Type transcription factor
Description TF Family: C3H
Location Contig4228: 82205-86073
Sequence    

Annotation

kegg
ID pmum:103331555
description zinc finger CCCH domain-containing protein 48-like
nr
ID XP_012067070.1
description PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
swissprot
ID Q9FNZ2
description Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana GN=ZFWD1 PE=2 SV=1
trembl
ID A0A067LC60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01868 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 48-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41856: 85946-86121 , PASA_asmbl_41857: 87072-88239
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004228_100 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
2 Hb_007253_020 0.0892536854 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
3 Hb_010021_030 0.0999384235 - - PREDICTED: pre-mRNA-processing protein 40A isoform X4 [Jatropha curcas]
4 Hb_007186_020 0.1089424528 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
5 Hb_043362_010 0.1096008415 - - hypothetical protein JCGZ_23765 [Jatropha curcas]
6 Hb_068575_010 0.1156607294 - - PREDICTED: protein GAMETE EXPRESSED 2 [Jatropha curcas]
7 Hb_003805_040 0.1199173766 - - Sacsin [Glycine soja]
8 Hb_000062_020 0.1262640109 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_008484_010 0.1275148383 - - hypothetical protein B456_008G050700 [Gossypium raimondii]
10 Hb_000237_140 0.1276270892 - - PREDICTED: RNA-binding protein 28 [Jatropha curcas]
11 Hb_000069_570 0.1281800168 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
12 Hb_000066_150 0.1286861725 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
13 Hb_002960_080 0.1295614908 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105635322 [Jatropha curcas]
14 Hb_010315_020 0.1302276184 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
15 Hb_000270_030 0.1316371261 transcription factor TF Family: HB hypothetical protein POPTR_0015s07640g [Populus trichocarpa]
16 Hb_002400_140 0.1316550602 - - protein kinase, putative [Ricinus communis]
17 Hb_011242_060 0.1325727467 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
18 Hb_000347_560 0.1329902127 - - -
19 Hb_008103_020 0.133654691 - - hypothetical protein POPTR_0003s20310g [Populus trichocarpa]
20 Hb_004204_130 0.1336784555 - - PREDICTED: uncharacterized protein LOC103930912 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_004228_100 Hb_004228_100 Hb_007253_020 Hb_007253_020 Hb_004228_100--Hb_007253_020 Hb_010021_030 Hb_010021_030 Hb_004228_100--Hb_010021_030 Hb_007186_020 Hb_007186_020 Hb_004228_100--Hb_007186_020 Hb_043362_010 Hb_043362_010 Hb_004228_100--Hb_043362_010 Hb_068575_010 Hb_068575_010 Hb_004228_100--Hb_068575_010 Hb_003805_040 Hb_003805_040 Hb_004228_100--Hb_003805_040 Hb_000066_150 Hb_000066_150 Hb_007253_020--Hb_000066_150 Hb_001381_050 Hb_001381_050 Hb_007253_020--Hb_001381_050 Hb_000088_050 Hb_000088_050 Hb_007253_020--Hb_000088_050 Hb_010315_020 Hb_010315_020 Hb_007253_020--Hb_010315_020 Hb_092000_010 Hb_092000_010 Hb_007253_020--Hb_092000_010 Hb_010021_030--Hb_007186_020 Hb_000062_020 Hb_000062_020 Hb_010021_030--Hb_000062_020 Hb_000270_030 Hb_000270_030 Hb_010021_030--Hb_000270_030 Hb_000261_240 Hb_000261_240 Hb_010021_030--Hb_000261_240 Hb_008484_060 Hb_008484_060 Hb_010021_030--Hb_008484_060 Hb_001860_040 Hb_001860_040 Hb_007186_020--Hb_001860_040 Hb_011202_020 Hb_011202_020 Hb_007186_020--Hb_011202_020 Hb_000680_110 Hb_000680_110 Hb_007186_020--Hb_000680_110 Hb_007426_130 Hb_007426_130 Hb_007186_020--Hb_007426_130 Hb_000291_090 Hb_000291_090 Hb_007186_020--Hb_000291_090 Hb_002960_080 Hb_002960_080 Hb_043362_010--Hb_002960_080 Hb_001188_020 Hb_001188_020 Hb_043362_010--Hb_001188_020 Hb_002007_110 Hb_002007_110 Hb_043362_010--Hb_002007_110 Hb_003912_070 Hb_003912_070 Hb_043362_010--Hb_003912_070 Hb_003581_170 Hb_003581_170 Hb_043362_010--Hb_003581_170 Hb_043362_010--Hb_003805_040 Hb_000635_200 Hb_000635_200 Hb_068575_010--Hb_000635_200 Hb_001673_060 Hb_001673_060 Hb_068575_010--Hb_001673_060 Hb_003604_050 Hb_003604_050 Hb_068575_010--Hb_003604_050 Hb_000479_240 Hb_000479_240 Hb_068575_010--Hb_000479_240 Hb_068575_010--Hb_043362_010 Hb_000352_070 Hb_000352_070 Hb_068575_010--Hb_000352_070 Hb_009486_170 Hb_009486_170 Hb_003805_040--Hb_009486_170 Hb_000665_230 Hb_000665_230 Hb_003805_040--Hb_000665_230 Hb_001133_030 Hb_001133_030 Hb_003805_040--Hb_001133_030 Hb_008053_040 Hb_008053_040 Hb_003805_040--Hb_008053_040 Hb_003805_040--Hb_011202_020 Hb_002521_020 Hb_002521_020 Hb_003805_040--Hb_002521_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.169588 0.515554 0.211452 0.400697 0.208542 0.616845
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.127026 0.133266 0.158185 0.225212 0.35263

CAGE analysis