Hb_000680_110

Information

Type -
Description -
Location Contig680: 102244-107252
Sequence    

Annotation

kegg
ID rcu:RCOM_0312330
description Endosomal P24A protein precursor, putative
nr
ID XP_002527407.1
description Endosomal P24A protein precursor, putative [Ricinus communis]
swissprot
ID Q9LIC2
description Transmembrane 9 superfamily member 7 OS=Arabidopsis thaliana GN=TMN7 PE=2 SV=1
trembl
ID B9SN38
description Endosomal P24A protein, putative OS=Ricinus communis GN=RCOM_0312330 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane 9 superfamily member 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53751: 102289-107222 , PASA_asmbl_53752: 104769-104985
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000680_110 0.0 - - Endosomal P24A protein precursor, putative [Ricinus communis]
2 Hb_004531_120 0.0600622661 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
3 Hb_001195_470 0.0757848215 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
4 Hb_000723_220 0.0801028251 - - PREDICTED: uncharacterized protein LOC105642234 [Jatropha curcas]
5 Hb_000264_350 0.0856188507 - - PREDICTED: uncharacterized protein LOC105649541 [Jatropha curcas]
6 Hb_000230_260 0.0860963049 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
7 Hb_002902_080 0.0862355961 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
8 Hb_000556_220 0.0871047656 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
9 Hb_000094_310 0.0876900151 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
10 Hb_002284_250 0.0891909579 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
11 Hb_004410_050 0.0903226262 - - PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Jatropha curcas]
12 Hb_003939_040 0.091782674 - - hypothetical protein CICLE_v10014350mg [Citrus clementina]
13 Hb_001821_150 0.0922827327 - - PREDICTED: potassium transporter 7-like [Jatropha curcas]
14 Hb_178968_050 0.0936687374 - - PREDICTED: probable serine incorporator [Jatropha curcas]
15 Hb_000667_030 0.094372771 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
16 Hb_000130_180 0.0957423706 - - PREDICTED: GPI inositol-deacylase-like isoform X2 [Jatropha curcas]
17 Hb_011287_080 0.0960323152 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001366_210 0.0964461306 - - cathepsin B, putative [Ricinus communis]
19 Hb_003417_010 0.0980087432 - - PREDICTED: protein TPLATE [Jatropha curcas]
20 Hb_011202_020 0.0985255383 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000680_110 Hb_000680_110 Hb_004531_120 Hb_004531_120 Hb_000680_110--Hb_004531_120 Hb_001195_470 Hb_001195_470 Hb_000680_110--Hb_001195_470 Hb_000723_220 Hb_000723_220 Hb_000680_110--Hb_000723_220 Hb_000264_350 Hb_000264_350 Hb_000680_110--Hb_000264_350 Hb_000230_260 Hb_000230_260 Hb_000680_110--Hb_000230_260 Hb_002902_080 Hb_002902_080 Hb_000680_110--Hb_002902_080 Hb_000139_130 Hb_000139_130 Hb_004531_120--Hb_000139_130 Hb_004109_230 Hb_004109_230 Hb_004531_120--Hb_004109_230 Hb_000062_020 Hb_000062_020 Hb_004531_120--Hb_000062_020 Hb_002284_250 Hb_002284_250 Hb_004531_120--Hb_002284_250 Hb_000130_180 Hb_000130_180 Hb_004531_120--Hb_000130_180 Hb_001195_470--Hb_000723_220 Hb_004019_120 Hb_004019_120 Hb_001195_470--Hb_004019_120 Hb_003417_010 Hb_003417_010 Hb_001195_470--Hb_003417_010 Hb_001821_150 Hb_001821_150 Hb_001195_470--Hb_001821_150 Hb_001195_470--Hb_004531_120 Hb_000723_220--Hb_000230_260 Hb_006637_020 Hb_006637_020 Hb_000723_220--Hb_006637_020 Hb_017358_040 Hb_017358_040 Hb_000723_220--Hb_017358_040 Hb_085781_020 Hb_085781_020 Hb_000723_220--Hb_085781_020 Hb_071130_010 Hb_071130_010 Hb_000723_220--Hb_071130_010 Hb_000004_030 Hb_000004_030 Hb_000264_350--Hb_000004_030 Hb_000960_040 Hb_000960_040 Hb_000264_350--Hb_000960_040 Hb_000579_240 Hb_000579_240 Hb_000264_350--Hb_000579_240 Hb_002675_030 Hb_002675_030 Hb_000264_350--Hb_002675_030 Hb_000183_050 Hb_000183_050 Hb_000264_350--Hb_000183_050 Hb_000264_350--Hb_001821_150 Hb_000230_260--Hb_071130_010 Hb_000069_120 Hb_000069_120 Hb_000230_260--Hb_000069_120 Hb_041327_010 Hb_041327_010 Hb_000230_260--Hb_041327_010 Hb_003060_060 Hb_003060_060 Hb_000230_260--Hb_003060_060 Hb_000230_260--Hb_085781_020 Hb_000412_010 Hb_000412_010 Hb_000230_260--Hb_000412_010 Hb_002902_080--Hb_000130_180 Hb_002902_080--Hb_004531_120 Hb_150346_010 Hb_150346_010 Hb_002902_080--Hb_150346_010 Hb_004306_040 Hb_004306_040 Hb_002902_080--Hb_004306_040 Hb_027136_010 Hb_027136_010 Hb_002902_080--Hb_027136_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.9591 52.8256 20.5575 67.0011 60.5048 55.0459
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.2371 15.3169 37.3546 56.0772 40.1411

CAGE analysis