Hb_004306_040

Information

Type -
Description -
Location Contig4306: 22365-28089
Sequence    

Annotation

kegg
ID rcu:RCOM_1719190
description methionine-tRNA synthetase, putative (EC:6.1.1.10)
nr
ID XP_012085077.1
description PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
swissprot
ID Q9ZTS1
description Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os06g0508700 PE=2 SV=2
trembl
ID A0A067K277
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17523 PE=3 SV=1
Gene Ontology
ID GO:0005737
description probable methionine--trna ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42173: 24390-27976 , PASA_asmbl_42174: 22971-25696 , PASA_asmbl_42175: 28581-28885
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004306_040 0.0 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
2 Hb_009851_050 0.1101154584 - - PREDICTED: nephrocystin-3 [Jatropha curcas]
3 Hb_028707_080 0.1156717555 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
4 Hb_002902_080 0.1201972721 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
5 Hb_000058_110 0.1216343931 - - PREDICTED: putative BPI/LBP family protein At1g04970 isoform X1 [Jatropha curcas]
6 Hb_000365_330 0.1279959559 - - zinc finger protein, putative [Ricinus communis]
7 Hb_000008_270 0.129505631 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein REVOLUTA [Jatropha curcas]
8 Hb_000130_180 0.1312075879 - - PREDICTED: GPI inositol-deacylase-like isoform X2 [Jatropha curcas]
9 Hb_031931_020 0.1317028858 - - Minor histocompatibility antigen H13, putative [Ricinus communis]
10 Hb_000345_360 0.1327084343 - - PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]
11 Hb_004223_290 0.1334593307 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
12 Hb_006355_020 0.1347187953 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
13 Hb_002226_080 0.136028818 - - PREDICTED: uncharacterized protein LOC105641402 isoform X1 [Jatropha curcas]
14 Hb_001109_060 0.1370461522 - - amino acid transporter, putative [Ricinus communis]
15 Hb_000260_600 0.1400707241 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000664_110 0.14066245 - - PREDICTED: monoglyceride lipase [Jatropha curcas]
17 Hb_000890_230 0.1407228481 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
18 Hb_041828_010 0.1427820033 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
19 Hb_116420_040 0.143455741 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001546_070 0.1437829242 - - Uncharacterized protein F383_19872 [Gossypium arboreum]

Gene co-expression network

sample Hb_004306_040 Hb_004306_040 Hb_009851_050 Hb_009851_050 Hb_004306_040--Hb_009851_050 Hb_028707_080 Hb_028707_080 Hb_004306_040--Hb_028707_080 Hb_002902_080 Hb_002902_080 Hb_004306_040--Hb_002902_080 Hb_000058_110 Hb_000058_110 Hb_004306_040--Hb_000058_110 Hb_000365_330 Hb_000365_330 Hb_004306_040--Hb_000365_330 Hb_000008_270 Hb_000008_270 Hb_004306_040--Hb_000008_270 Hb_009851_050--Hb_000008_270 Hb_002631_070 Hb_002631_070 Hb_009851_050--Hb_002631_070 Hb_017295_010 Hb_017295_010 Hb_009851_050--Hb_017295_010 Hb_003994_280 Hb_003994_280 Hb_009851_050--Hb_003994_280 Hb_009851_050--Hb_028707_080 Hb_009529_030 Hb_009529_030 Hb_009851_050--Hb_009529_030 Hb_000230_180 Hb_000230_180 Hb_028707_080--Hb_000230_180 Hb_002498_050 Hb_002498_050 Hb_028707_080--Hb_002498_050 Hb_001546_070 Hb_001546_070 Hb_028707_080--Hb_001546_070 Hb_000664_110 Hb_000664_110 Hb_028707_080--Hb_000664_110 Hb_000680_110 Hb_000680_110 Hb_002902_080--Hb_000680_110 Hb_000130_180 Hb_000130_180 Hb_002902_080--Hb_000130_180 Hb_004531_120 Hb_004531_120 Hb_002902_080--Hb_004531_120 Hb_150346_010 Hb_150346_010 Hb_002902_080--Hb_150346_010 Hb_027136_010 Hb_027136_010 Hb_002902_080--Hb_027136_010 Hb_002226_080 Hb_002226_080 Hb_000058_110--Hb_002226_080 Hb_001440_020 Hb_001440_020 Hb_000058_110--Hb_001440_020 Hb_009252_030 Hb_009252_030 Hb_000058_110--Hb_009252_030 Hb_001491_030 Hb_001491_030 Hb_000058_110--Hb_001491_030 Hb_005977_100 Hb_005977_100 Hb_000058_110--Hb_005977_100 Hb_000359_190 Hb_000359_190 Hb_000058_110--Hb_000359_190 Hb_001638_300 Hb_001638_300 Hb_000365_330--Hb_001638_300 Hb_000365_330--Hb_000664_110 Hb_005946_210 Hb_005946_210 Hb_000365_330--Hb_005946_210 Hb_000352_070 Hb_000352_070 Hb_000365_330--Hb_000352_070 Hb_132840_100 Hb_132840_100 Hb_000365_330--Hb_132840_100 Hb_001109_060 Hb_001109_060 Hb_000365_330--Hb_001109_060 Hb_005227_010 Hb_005227_010 Hb_000008_270--Hb_005227_010 Hb_000008_270--Hb_017295_010 Hb_000107_210 Hb_000107_210 Hb_000008_270--Hb_000107_210 Hb_000008_270--Hb_001109_060 Hb_000008_270--Hb_009529_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.06271 5.154 2.10759 11.9086 8.06786 6.95675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.72441 1.57673 2.39964 3.40513 7.49765

CAGE analysis