Hb_001546_070

Information

Type -
Description -
Location Contig1546: 35963-39430
Sequence    

Annotation

kegg
ID cit:102628666
description uncharacterized LOC102628666
nr
ID KHF99520.1
description Uncharacterized protein F383_19872 [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0B0MKR9
description Uncharacterized protein OS=Gossypium arboreum GN=F383_19872 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13391: 36144-36350 , PASA_asmbl_13392: 36909-37275 , PASA_asmbl_13393: 37928-38043 , PASA_asmbl_13394: 38050-38929
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001546_070 0.0 - - Uncharacterized protein F383_19872 [Gossypium arboreum]
2 Hb_000692_150 0.1114514329 - - PREDICTED: probable prolyl 4-hydroxylase 3 [Jatropha curcas]
3 Hb_001114_090 0.1153300426 - - PREDICTED: magnesium-dependent phosphatase 1 [Jatropha curcas]
4 Hb_028707_080 0.1197278493 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
5 Hb_000960_040 0.123925106 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
6 Hb_162275_040 0.1263924528 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000347_560 0.1264433079 - - -
8 Hb_000664_110 0.1267929835 - - PREDICTED: monoglyceride lipase [Jatropha curcas]
9 Hb_010272_010 0.1294001307 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
10 Hb_005946_210 0.1332159458 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
11 Hb_000215_220 0.1368881936 - - PREDICTED: derlin-1 isoform X1 [Jatropha curcas]
12 Hb_000103_310 0.1369839096 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
13 Hb_000139_260 0.1386877572 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
14 Hb_008484_010 0.1393633842 - - hypothetical protein B456_008G050700 [Gossypium raimondii]
15 Hb_003671_010 0.1409571104 - - PREDICTED: protein transport protein SFT2 isoform X1 [Jatropha curcas]
16 Hb_000130_180 0.1411166265 - - PREDICTED: GPI inositol-deacylase-like isoform X2 [Jatropha curcas]
17 Hb_002014_040 0.1414766779 - - site-1 protease, putative [Ricinus communis]
18 Hb_008226_090 0.1418159098 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]
19 Hb_041828_010 0.1425572256 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
20 Hb_001194_020 0.1433156852 - - microtubule associated protein xmap215, putative [Ricinus communis]

Gene co-expression network

sample Hb_001546_070 Hb_001546_070 Hb_000692_150 Hb_000692_150 Hb_001546_070--Hb_000692_150 Hb_001114_090 Hb_001114_090 Hb_001546_070--Hb_001114_090 Hb_028707_080 Hb_028707_080 Hb_001546_070--Hb_028707_080 Hb_000960_040 Hb_000960_040 Hb_001546_070--Hb_000960_040 Hb_162275_040 Hb_162275_040 Hb_001546_070--Hb_162275_040 Hb_000347_560 Hb_000347_560 Hb_001546_070--Hb_000347_560 Hb_009252_050 Hb_009252_050 Hb_000692_150--Hb_009252_050 Hb_008226_090 Hb_008226_090 Hb_000692_150--Hb_008226_090 Hb_005946_210 Hb_005946_210 Hb_000692_150--Hb_005946_210 Hb_134362_010 Hb_134362_010 Hb_000692_150--Hb_134362_010 Hb_004109_230 Hb_004109_230 Hb_000692_150--Hb_004109_230 Hb_044486_020 Hb_044486_020 Hb_000692_150--Hb_044486_020 Hb_143629_150 Hb_143629_150 Hb_001114_090--Hb_143629_150 Hb_003687_210 Hb_003687_210 Hb_001114_090--Hb_003687_210 Hb_000056_160 Hb_000056_160 Hb_001114_090--Hb_000056_160 Hb_003688_090 Hb_003688_090 Hb_001114_090--Hb_003688_090 Hb_002073_190 Hb_002073_190 Hb_001114_090--Hb_002073_190 Hb_009851_050 Hb_009851_050 Hb_028707_080--Hb_009851_050 Hb_004306_040 Hb_004306_040 Hb_028707_080--Hb_004306_040 Hb_000230_180 Hb_000230_180 Hb_028707_080--Hb_000230_180 Hb_002498_050 Hb_002498_050 Hb_028707_080--Hb_002498_050 Hb_000664_110 Hb_000664_110 Hb_028707_080--Hb_000664_110 Hb_000004_030 Hb_000004_030 Hb_000960_040--Hb_000004_030 Hb_000264_350 Hb_000264_350 Hb_000960_040--Hb_000264_350 Hb_008511_020 Hb_008511_020 Hb_000960_040--Hb_008511_020 Hb_000667_030 Hb_000667_030 Hb_000960_040--Hb_000667_030 Hb_002675_030 Hb_002675_030 Hb_000960_040--Hb_002675_030 Hb_010294_010 Hb_010294_010 Hb_000960_040--Hb_010294_010 Hb_000086_440 Hb_000086_440 Hb_162275_040--Hb_000086_440 Hb_002539_110 Hb_002539_110 Hb_162275_040--Hb_002539_110 Hb_001109_060 Hb_001109_060 Hb_162275_040--Hb_001109_060 Hb_010272_010 Hb_010272_010 Hb_162275_040--Hb_010272_010 Hb_005227_010 Hb_005227_010 Hb_162275_040--Hb_005227_010 Hb_006355_020 Hb_006355_020 Hb_162275_040--Hb_006355_020 Hb_000347_560--Hb_162275_040 Hb_008484_010 Hb_008484_010 Hb_000347_560--Hb_008484_010 Hb_041828_010 Hb_041828_010 Hb_000347_560--Hb_041828_010 Hb_004701_050 Hb_004701_050 Hb_000347_560--Hb_004701_050 Hb_002631_140 Hb_002631_140 Hb_000347_560--Hb_002631_140 Hb_000069_570 Hb_000069_570 Hb_000347_560--Hb_000069_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.363245 1.05271 1.08132 1.84774 1.8419 1.86238
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.544405 0.588584 0.386935 0.823178 1.18077

CAGE analysis