Hb_001114_090

Information

Type -
Description -
Location Contig1114: 93767-96407
Sequence    

Annotation

kegg
ID rcu:RCOM_0886170
description Magnesium-dependent phosphatase, putative (EC:3.1.3.48)
nr
ID XP_012081356.1
description PREDICTED: magnesium-dependent phosphatase 1 [Jatropha curcas]
swissprot
ID Q9D967
description Magnesium-dependent phosphatase 1 OS=Mus musculus GN=Mdp1 PE=1 SV=1
trembl
ID A0A067KCK3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18742 PE=4 SV=1
Gene Ontology
ID GO:0004725
description magnesium-dependent phosphatase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03481: 93793-96283
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001114_090 0.0 - - PREDICTED: magnesium-dependent phosphatase 1 [Jatropha curcas]
2 Hb_143629_150 0.1044381851 - - PREDICTED: flap endonuclease 1 isoform X2 [Prunus mume]
3 Hb_001546_070 0.1153300426 - - Uncharacterized protein F383_19872 [Gossypium arboreum]
4 Hb_003687_210 0.1178738672 - - PREDICTED: malate dehydrogenase [Populus euphratica]
5 Hb_000056_160 0.122824268 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 [Jatropha curcas]
6 Hb_003688_090 0.1276808597 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
7 Hb_002073_190 0.1312571547 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
8 Hb_000000_150 0.1314103127 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
9 Hb_000139_260 0.1316364037 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
10 Hb_002783_170 0.1338782984 - - PREDICTED: BRCA1-A complex subunit BRE isoform X2 [Jatropha curcas]
11 Hb_006570_010 0.133993324 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002942_210 0.1350954127 - - alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]
13 Hb_011671_090 0.1370416341 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
14 Hb_000046_330 0.1377430735 - - PREDICTED: uncharacterized protein LOC105631826 [Jatropha curcas]
15 Hb_000915_080 0.1384249356 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
16 Hb_003671_010 0.1397486386 - - PREDICTED: protein transport protein SFT2 isoform X1 [Jatropha curcas]
17 Hb_003104_040 0.1398044964 - - PREDICTED: insulin-degrading enzyme isoform X1 [Jatropha curcas]
18 Hb_002273_120 0.1403512791 - - PREDICTED: probable apyrase 6 [Jatropha curcas]
19 Hb_000787_060 0.1406078965 - - thioredoxin domain-containing protein, putative [Ricinus communis]
20 Hb_001931_030 0.1410252821 - - PREDICTED: T-complex protein 1 subunit eta-like [Nelumbo nucifera]

Gene co-expression network

sample Hb_001114_090 Hb_001114_090 Hb_143629_150 Hb_143629_150 Hb_001114_090--Hb_143629_150 Hb_001546_070 Hb_001546_070 Hb_001114_090--Hb_001546_070 Hb_003687_210 Hb_003687_210 Hb_001114_090--Hb_003687_210 Hb_000056_160 Hb_000056_160 Hb_001114_090--Hb_000056_160 Hb_003688_090 Hb_003688_090 Hb_001114_090--Hb_003688_090 Hb_002073_190 Hb_002073_190 Hb_001114_090--Hb_002073_190 Hb_001301_220 Hb_001301_220 Hb_143629_150--Hb_001301_220 Hb_005588_090 Hb_005588_090 Hb_143629_150--Hb_005588_090 Hb_001089_070 Hb_001089_070 Hb_143629_150--Hb_001089_070 Hb_005053_010 Hb_005053_010 Hb_143629_150--Hb_005053_010 Hb_000318_120 Hb_000318_120 Hb_143629_150--Hb_000318_120 Hb_032202_120 Hb_032202_120 Hb_143629_150--Hb_032202_120 Hb_000692_150 Hb_000692_150 Hb_001546_070--Hb_000692_150 Hb_028707_080 Hb_028707_080 Hb_001546_070--Hb_028707_080 Hb_000960_040 Hb_000960_040 Hb_001546_070--Hb_000960_040 Hb_162275_040 Hb_162275_040 Hb_001546_070--Hb_162275_040 Hb_000347_560 Hb_000347_560 Hb_001546_070--Hb_000347_560 Hb_003687_210--Hb_000056_160 Hb_000579_070 Hb_000579_070 Hb_003687_210--Hb_000579_070 Hb_000579_060 Hb_000579_060 Hb_003687_210--Hb_000579_060 Hb_003104_040 Hb_003104_040 Hb_003687_210--Hb_003104_040 Hb_013726_080 Hb_013726_080 Hb_003687_210--Hb_013726_080 Hb_004096_060 Hb_004096_060 Hb_003687_210--Hb_004096_060 Hb_000056_160--Hb_000579_070 Hb_000261_210 Hb_000261_210 Hb_000056_160--Hb_000261_210 Hb_004064_040 Hb_004064_040 Hb_000056_160--Hb_004064_040 Hb_000154_050 Hb_000154_050 Hb_000056_160--Hb_000154_050 Hb_001002_060 Hb_001002_060 Hb_000056_160--Hb_001002_060 Hb_010150_020 Hb_010150_020 Hb_003688_090--Hb_010150_020 Hb_009049_020 Hb_009049_020 Hb_003688_090--Hb_009049_020 Hb_007951_040 Hb_007951_040 Hb_003688_090--Hb_007951_040 Hb_003688_090--Hb_002073_190 Hb_000035_110 Hb_000035_110 Hb_003688_090--Hb_000035_110 Hb_002398_030 Hb_002398_030 Hb_003688_090--Hb_002398_030 Hb_000035_470 Hb_000035_470 Hb_002073_190--Hb_000035_470 Hb_015807_050 Hb_015807_050 Hb_002073_190--Hb_015807_050 Hb_002073_190--Hb_000035_110 Hb_000000_150 Hb_000000_150 Hb_002073_190--Hb_000000_150 Hb_001377_310 Hb_001377_310 Hb_002073_190--Hb_001377_310 Hb_002272_130 Hb_002272_130 Hb_002073_190--Hb_002272_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.45144 10.8197 25.7491 25.1032 29.8109 28.2148
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.4712 10.0946 3.8927 17.3332 16.7466

CAGE analysis