Hb_005694_010

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig5694: 4683-7178
Sequence    

Annotation

kegg
ID tcc:TCM_005109
description F-box family protein, putative isoform 1
nr
ID XP_007051496.1
description F-box family protein, putative isoform 1 [Theobroma cacao]
swissprot
ID Q9ZPY0
description Dof zinc finger protein DOF2.5 OS=Arabidopsis thaliana GN=DOF2.5 PE=2 SV=3
trembl
ID A0A061E0A4
description F-box family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_005109 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger isoform x3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49220: 5706-6050
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005694_010 0.0 transcription factor TF Family: C2C2-Dof F-box family protein, putative isoform 1 [Theobroma cacao]
2 Hb_003640_020 0.1280259541 - - pelota, putative [Ricinus communis]
3 Hb_000331_280 0.1431878149 - - AMP dependent CoA ligase, putative [Ricinus communis]
4 Hb_027760_070 0.1446362401 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02-like [Jatropha curcas]
5 Hb_000418_010 0.1486208304 - - PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Jatropha curcas]
6 Hb_000245_080 0.1500585632 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-15 [Jatropha curcas]
7 Hb_000457_140 0.1507203939 - - PREDICTED: transmembrane protein 136-like [Jatropha curcas]
8 Hb_005539_310 0.1542095725 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
9 Hb_022250_150 0.1566875244 - - PREDICTED: uncharacterized protein LOC105648687 [Jatropha curcas]
10 Hb_063716_090 0.1636896556 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000170_240 0.1676049344 - - PREDICTED: auxilin-related protein 1 [Jatropha curcas]
12 Hb_001205_110 0.1692475118 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
13 Hb_001278_040 0.1717256055 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
14 Hb_012799_140 0.1721861283 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
15 Hb_003092_060 0.1727461576 - - calcineurin-like phosphoesterase [Manihot esculenta]
16 Hb_002213_040 0.1738416988 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
17 Hb_003082_040 0.1748108589 - - PREDICTED: receptor-like protein kinase HSL1 [Phoenix dactylifera]
18 Hb_001255_010 0.1752487093 - - PREDICTED: phytosulfokine receptor 1-like [Tarenaya hassleriana]
19 Hb_080451_010 0.1754857247 - - PREDICTED: ankyrin repeat-containing protein At2g01680 [Jatropha curcas]
20 Hb_006065_050 0.1785995542 transcription factor TF Family: AP2 PREDICTED: floral homeotic protein APETALA 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005694_010 Hb_005694_010 Hb_003640_020 Hb_003640_020 Hb_005694_010--Hb_003640_020 Hb_000331_280 Hb_000331_280 Hb_005694_010--Hb_000331_280 Hb_027760_070 Hb_027760_070 Hb_005694_010--Hb_027760_070 Hb_000418_010 Hb_000418_010 Hb_005694_010--Hb_000418_010 Hb_000245_080 Hb_000245_080 Hb_005694_010--Hb_000245_080 Hb_000457_140 Hb_000457_140 Hb_005694_010--Hb_000457_140 Hb_056987_010 Hb_056987_010 Hb_003640_020--Hb_056987_010 Hb_002027_380 Hb_002027_380 Hb_003640_020--Hb_002027_380 Hb_073171_090 Hb_073171_090 Hb_003640_020--Hb_073171_090 Hb_085364_010 Hb_085364_010 Hb_003640_020--Hb_085364_010 Hb_167234_010 Hb_167234_010 Hb_003640_020--Hb_167234_010 Hb_000732_080 Hb_000732_080 Hb_000331_280--Hb_000732_080 Hb_080451_010 Hb_080451_010 Hb_000331_280--Hb_080451_010 Hb_005203_020 Hb_005203_020 Hb_000331_280--Hb_005203_020 Hb_003082_040 Hb_003082_040 Hb_000331_280--Hb_003082_040 Hb_001278_040 Hb_001278_040 Hb_000331_280--Hb_001278_040 Hb_030736_070 Hb_030736_070 Hb_027760_070--Hb_030736_070 Hb_000139_130 Hb_000139_130 Hb_027760_070--Hb_000139_130 Hb_027760_070--Hb_000457_140 Hb_000359_140 Hb_000359_140 Hb_027760_070--Hb_000359_140 Hb_146081_010 Hb_146081_010 Hb_027760_070--Hb_146081_010 Hb_008143_070 Hb_008143_070 Hb_027760_070--Hb_008143_070 Hb_000197_030 Hb_000197_030 Hb_000418_010--Hb_000197_030 Hb_000069_480 Hb_000069_480 Hb_000418_010--Hb_000069_480 Hb_000671_080 Hb_000671_080 Hb_000418_010--Hb_000671_080 Hb_001257_100 Hb_001257_100 Hb_000418_010--Hb_001257_100 Hb_001489_100 Hb_001489_100 Hb_000418_010--Hb_001489_100 Hb_006198_020 Hb_006198_020 Hb_000418_010--Hb_006198_020 Hb_000003_540 Hb_000003_540 Hb_000245_080--Hb_000003_540 Hb_024879_010 Hb_024879_010 Hb_000245_080--Hb_024879_010 Hb_005539_310 Hb_005539_310 Hb_000245_080--Hb_005539_310 Hb_006065_050 Hb_006065_050 Hb_000245_080--Hb_006065_050 Hb_000245_080--Hb_000359_140 Hb_001217_040 Hb_001217_040 Hb_000245_080--Hb_001217_040 Hb_000457_140--Hb_030736_070 Hb_001205_110 Hb_001205_110 Hb_000457_140--Hb_001205_110 Hb_010697_040 Hb_010697_040 Hb_000457_140--Hb_010697_040 Hb_000457_140--Hb_008143_070 Hb_001055_030 Hb_001055_030 Hb_000457_140--Hb_001055_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.97389 14.9815 4.331 18.5991 6.03681 6.79287
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.0736 4.04529 0.404034 7.21005 2.5299

CAGE analysis