Hb_006065_050

Information

Type transcription factor
Description TF Family: AP2
Location Contig6065: 76893-79996
Sequence    

Annotation

kegg
ID tcc:TCM_000665
description Eukaryotic elongation factor 5A-1 isoform 3
nr
ID XP_012079272.1
description PREDICTED: floral homeotic protein APETALA 2 isoform X1 [Jatropha curcas]
swissprot
ID P47927
description Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1
trembl
ID E6NU83
description JHL03K20.2 protein OS=Jatropha curcas GN=JHL03K20.2 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor apetala2 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50799: 77062-78391 , PASA_asmbl_50800: 78403-79343
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006065_050 0.0 transcription factor TF Family: AP2 PREDICTED: floral homeotic protein APETALA 2 isoform X1 [Jatropha curcas]
2 Hb_002837_060 0.1110540343 - - PREDICTED: uncharacterized protein At1g10890-like [Nelumbo nucifera]
3 Hb_001016_050 0.114212725 - - drought-inducible protein [Manihot esculenta]
4 Hb_010697_040 0.1163935431 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
5 Hb_011609_140 0.1171042987 - - hypothetical protein JCGZ_12974 [Jatropha curcas]
6 Hb_005000_320 0.1181298471 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
7 Hb_004109_230 0.1197465894 - - heat shock protein binding protein, putative [Ricinus communis]
8 Hb_004128_130 0.1204727216 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
9 Hb_000445_470 0.1230379937 - - PREDICTED: RING finger and transmembrane domain-containing protein 1-like [Jatropha curcas]
10 Hb_000011_190 0.1240154469 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6 [Jatropha curcas]
11 Hb_028962_020 0.1252330824 - - hypothetical protein POPTR_0016s00660g [Populus trichocarpa]
12 Hb_000270_030 0.1256755833 transcription factor TF Family: HB hypothetical protein POPTR_0015s07640g [Populus trichocarpa]
13 Hb_000139_130 0.1256769449 - - PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
14 Hb_000527_010 0.1259107946 - - katanin P80 subunit, putative [Ricinus communis]
15 Hb_001486_070 0.1264274193 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
16 Hb_001541_230 0.1264676509 - - unnamed protein product [Vitis vinifera]
17 Hb_006658_020 0.1264989713 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
18 Hb_032990_010 0.1272525212 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
19 Hb_000679_310 0.1276632571 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
20 Hb_000236_400 0.1278079102 - - hypothetical protein JCGZ_01058 [Jatropha curcas]

Gene co-expression network

sample Hb_006065_050 Hb_006065_050 Hb_002837_060 Hb_002837_060 Hb_006065_050--Hb_002837_060 Hb_001016_050 Hb_001016_050 Hb_006065_050--Hb_001016_050 Hb_010697_040 Hb_010697_040 Hb_006065_050--Hb_010697_040 Hb_011609_140 Hb_011609_140 Hb_006065_050--Hb_011609_140 Hb_005000_320 Hb_005000_320 Hb_006065_050--Hb_005000_320 Hb_004109_230 Hb_004109_230 Hb_006065_050--Hb_004109_230 Hb_032990_010 Hb_032990_010 Hb_002837_060--Hb_032990_010 Hb_000101_380 Hb_000101_380 Hb_002837_060--Hb_000101_380 Hb_000983_170 Hb_000983_170 Hb_002837_060--Hb_000983_170 Hb_005503_040 Hb_005503_040 Hb_002837_060--Hb_005503_040 Hb_001396_280 Hb_001396_280 Hb_002837_060--Hb_001396_280 Hb_000879_160 Hb_000879_160 Hb_002837_060--Hb_000879_160 Hb_006658_020 Hb_006658_020 Hb_001016_050--Hb_006658_020 Hb_005276_060 Hb_005276_060 Hb_001016_050--Hb_005276_060 Hb_000009_400 Hb_000009_400 Hb_001016_050--Hb_000009_400 Hb_001016_050--Hb_004109_230 Hb_008253_020 Hb_008253_020 Hb_001016_050--Hb_008253_020 Hb_007810_110 Hb_007810_110 Hb_001016_050--Hb_007810_110 Hb_000139_130 Hb_000139_130 Hb_010697_040--Hb_000139_130 Hb_010697_040--Hb_008253_020 Hb_007508_080 Hb_007508_080 Hb_010697_040--Hb_007508_080 Hb_001205_110 Hb_001205_110 Hb_010697_040--Hb_001205_110 Hb_000046_070 Hb_000046_070 Hb_010697_040--Hb_000046_070 Hb_010712_090 Hb_010712_090 Hb_010697_040--Hb_010712_090 Hb_000679_310 Hb_000679_310 Hb_011609_140--Hb_000679_310 Hb_000484_030 Hb_000484_030 Hb_011609_140--Hb_000484_030 Hb_001922_150 Hb_001922_150 Hb_011609_140--Hb_001922_150 Hb_001635_160 Hb_001635_160 Hb_011609_140--Hb_001635_160 Hb_001751_140 Hb_001751_140 Hb_011609_140--Hb_001751_140 Hb_003680_150 Hb_003680_150 Hb_011609_140--Hb_003680_150 Hb_000309_040 Hb_000309_040 Hb_005000_320--Hb_000309_040 Hb_000933_010 Hb_000933_010 Hb_005000_320--Hb_000933_010 Hb_002235_210 Hb_002235_210 Hb_005000_320--Hb_002235_210 Hb_001077_030 Hb_001077_030 Hb_005000_320--Hb_001077_030 Hb_001051_080 Hb_001051_080 Hb_005000_320--Hb_001051_080 Hb_000011_190 Hb_000011_190 Hb_005000_320--Hb_000011_190 Hb_000009_500 Hb_000009_500 Hb_004109_230--Hb_000009_500 Hb_004109_230--Hb_000139_130 Hb_028512_020 Hb_028512_020 Hb_004109_230--Hb_028512_020 Hb_003943_010 Hb_003943_010 Hb_004109_230--Hb_003943_010 Hb_014361_070 Hb_014361_070 Hb_004109_230--Hb_014361_070 Hb_011849_040 Hb_011849_040 Hb_004109_230--Hb_011849_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2634 11.0303 3.99317 13.0913 8.48049 8.30307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.12201 6.92444 2.09798 5.69454 6.41089

CAGE analysis