Hb_005203_020

Information

Type transcription factor
Description TF Family: TRAF
Location Contig5203: 25192-33722
Sequence    

Annotation

kegg
ID rcu:RCOM_1160850
description Regulatory protein NPR1, putative
nr
ID XP_002520549.1
description Regulatory protein NPR1, putative [Ricinus communis]
swissprot
ID Q8L746
description Regulatory protein NPR3 OS=Arabidopsis thaliana GN=NPR3 PE=1 SV=1
trembl
ID B9S3I0
description Regulatory protein NPR1, putative OS=Ricinus communis GN=RCOM_1160850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46679: 28058-32586 , PASA_asmbl_46681: 31597-31726 , PASA_asmbl_46682: 32688-33009
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005203_020 0.0 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
2 Hb_001369_770 0.1110056464 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
3 Hb_127599_010 0.1163661995 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
4 Hb_000120_520 0.1214847349 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
5 Hb_000123_330 0.1233746559 - - hypothetical protein M569_14136, partial [Genlisea aurea]
6 Hb_000363_370 0.1240305839 - - PREDICTED: putative BPI/LBP family protein At1g04970 [Jatropha curcas]
7 Hb_012725_040 0.1243395504 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
8 Hb_000152_640 0.1271162388 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
9 Hb_021576_140 0.1296663281 - - PREDICTED: protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION-like [Jatropha curcas]
10 Hb_001865_060 0.1313167542 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
11 Hb_085364_010 0.1344937682 - - PREDICTED: nicalin-1-like [Populus euphratica]
12 Hb_000836_370 0.136255892 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
13 Hb_012038_010 0.1395046008 - - phospholipid-transporting atpase, putative [Ricinus communis]
14 Hb_000123_350 0.1430624529 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
15 Hb_003155_020 0.1437977536 - - Rpp4C3 [Medicago truncatula]
16 Hb_002027_380 0.1439765464 - - PREDICTED: secoisolariciresinol dehydrogenase isoform X2 [Jatropha curcas]
17 Hb_000732_080 0.1442115435 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g45440 [Jatropha curcas]
18 Hb_000700_060 0.1454363748 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
19 Hb_000062_080 0.145849294 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
20 Hb_002942_110 0.1459780897 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_005203_020 Hb_005203_020 Hb_001369_770 Hb_001369_770 Hb_005203_020--Hb_001369_770 Hb_127599_010 Hb_127599_010 Hb_005203_020--Hb_127599_010 Hb_000120_520 Hb_000120_520 Hb_005203_020--Hb_000120_520 Hb_000123_330 Hb_000123_330 Hb_005203_020--Hb_000123_330 Hb_000363_370 Hb_000363_370 Hb_005203_020--Hb_000363_370 Hb_012725_040 Hb_012725_040 Hb_005203_020--Hb_012725_040 Hb_002942_110 Hb_002942_110 Hb_001369_770--Hb_002942_110 Hb_000538_190 Hb_000538_190 Hb_001369_770--Hb_000538_190 Hb_000599_130 Hb_000599_130 Hb_001369_770--Hb_000599_130 Hb_020178_050 Hb_020178_050 Hb_001369_770--Hb_020178_050 Hb_004195_120 Hb_004195_120 Hb_001369_770--Hb_004195_120 Hb_004218_090 Hb_004218_090 Hb_127599_010--Hb_004218_090 Hb_000062_080 Hb_000062_080 Hb_127599_010--Hb_000062_080 Hb_000169_170 Hb_000169_170 Hb_127599_010--Hb_000169_170 Hb_006738_050 Hb_006738_050 Hb_127599_010--Hb_006738_050 Hb_000700_060 Hb_000700_060 Hb_127599_010--Hb_000700_060 Hb_006683_040 Hb_006683_040 Hb_127599_010--Hb_006683_040 Hb_000958_150 Hb_000958_150 Hb_000120_520--Hb_000958_150 Hb_000152_640 Hb_000152_640 Hb_000120_520--Hb_000152_640 Hb_000120_520--Hb_000700_060 Hb_002284_170 Hb_002284_170 Hb_000120_520--Hb_002284_170 Hb_013749_020 Hb_013749_020 Hb_000120_520--Hb_013749_020 Hb_056987_010 Hb_056987_010 Hb_000120_520--Hb_056987_010 Hb_000123_330--Hb_006683_040 Hb_144744_010 Hb_144744_010 Hb_000123_330--Hb_144744_010 Hb_007894_130 Hb_007894_130 Hb_000123_330--Hb_007894_130 Hb_001055_030 Hb_001055_030 Hb_000123_330--Hb_001055_030 Hb_000123_330--Hb_127599_010 Hb_000363_370--Hb_007894_130 Hb_000406_110 Hb_000406_110 Hb_000363_370--Hb_000406_110 Hb_000059_020 Hb_000059_020 Hb_000363_370--Hb_000059_020 Hb_000363_370--Hb_144744_010 Hb_000134_340 Hb_000134_340 Hb_000363_370--Hb_000134_340 Hb_009028_010 Hb_009028_010 Hb_000363_370--Hb_009028_010 Hb_185513_010 Hb_185513_010 Hb_012725_040--Hb_185513_010 Hb_001865_060 Hb_001865_060 Hb_012725_040--Hb_001865_060 Hb_006111_030 Hb_006111_030 Hb_012725_040--Hb_006111_030 Hb_001258_150 Hb_001258_150 Hb_012725_040--Hb_001258_150 Hb_003494_060 Hb_003494_060 Hb_012725_040--Hb_003494_060 Hb_001141_360 Hb_001141_360 Hb_012725_040--Hb_001141_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.77563 17.503 4.37624 5.73396 5.18216 6.01078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.96032 1.98944 0.933753 4.67827 1.40851

CAGE analysis