Hb_000123_330

Information

Type -
Description -
Location Contig123: 290516-291010
Sequence    

Annotation

kegg
ID -
description -
nr
ID EPS60666.1
description hypothetical protein M569_14136, partial [Genlisea aurea]
swissprot
ID -
description -
trembl
ID K4BPI4
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g010300.2 PE=4 SV=1
Gene Ontology
ID GO:0005634
description abc transporter b family member 20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06988: 290873-309194
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000123_330 0.0 - - hypothetical protein M569_14136, partial [Genlisea aurea]
2 Hb_006683_040 0.1075060348 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
3 Hb_144744_010 0.1150364584 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
4 Hb_007894_130 0.1164764498 - - hypothetical protein RCOM_0584960 [Ricinus communis]
5 Hb_001055_030 0.1173558183 - - PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Jatropha curcas]
6 Hb_127599_010 0.1212132402 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
7 Hb_005203_020 0.1233746559 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
8 Hb_004371_010 0.1255453408 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
9 Hb_000061_490 0.1278761742 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
10 Hb_000236_410 0.1285619019 - - Paramyosin, putative [Ricinus communis]
11 Hb_000340_110 0.1300136159 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
12 Hb_000932_070 0.1312063781 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
13 Hb_000363_370 0.131500141 - - PREDICTED: putative BPI/LBP family protein At1g04970 [Jatropha curcas]
14 Hb_000768_180 0.1333022037 - - PREDICTED: uncharacterized protein LOC105632528 [Jatropha curcas]
15 Hb_001935_140 0.1333530113 - - CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
16 Hb_093084_070 0.133564975 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
17 Hb_000169_170 0.1349002498 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
18 Hb_010712_090 0.1352780691 - - PREDICTED: uncharacterized protein LOC105631276 [Jatropha curcas]
19 Hb_000236_220 0.1383936845 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
20 Hb_001019_180 0.1391355307 - - PREDICTED: uncharacterized protein LOC105639324 [Jatropha curcas]

Gene co-expression network

sample Hb_000123_330 Hb_000123_330 Hb_006683_040 Hb_006683_040 Hb_000123_330--Hb_006683_040 Hb_144744_010 Hb_144744_010 Hb_000123_330--Hb_144744_010 Hb_007894_130 Hb_007894_130 Hb_000123_330--Hb_007894_130 Hb_001055_030 Hb_001055_030 Hb_000123_330--Hb_001055_030 Hb_127599_010 Hb_127599_010 Hb_000123_330--Hb_127599_010 Hb_005203_020 Hb_005203_020 Hb_000123_330--Hb_005203_020 Hb_000932_070 Hb_000932_070 Hb_006683_040--Hb_000932_070 Hb_018301_010 Hb_018301_010 Hb_006683_040--Hb_018301_010 Hb_000340_110 Hb_000340_110 Hb_006683_040--Hb_000340_110 Hb_004218_090 Hb_004218_090 Hb_006683_040--Hb_004218_090 Hb_000061_490 Hb_000061_490 Hb_006683_040--Hb_000061_490 Hb_164010_070 Hb_164010_070 Hb_006683_040--Hb_164010_070 Hb_009028_010 Hb_009028_010 Hb_144744_010--Hb_009028_010 Hb_000236_410 Hb_000236_410 Hb_144744_010--Hb_000236_410 Hb_001935_140 Hb_001935_140 Hb_144744_010--Hb_001935_140 Hb_004371_010 Hb_004371_010 Hb_144744_010--Hb_004371_010 Hb_000406_110 Hb_000406_110 Hb_144744_010--Hb_000406_110 Hb_003060_090 Hb_003060_090 Hb_144744_010--Hb_003060_090 Hb_007894_130--Hb_001055_030 Hb_007894_130--Hb_000061_490 Hb_000780_170 Hb_000780_170 Hb_007894_130--Hb_000780_170 Hb_005260_010 Hb_005260_010 Hb_007894_130--Hb_005260_010 Hb_000768_180 Hb_000768_180 Hb_007894_130--Hb_000768_180 Hb_000236_220 Hb_000236_220 Hb_007894_130--Hb_000236_220 Hb_001055_030--Hb_000236_410 Hb_093084_070 Hb_093084_070 Hb_001055_030--Hb_093084_070 Hb_008143_070 Hb_008143_070 Hb_001055_030--Hb_008143_070 Hb_000009_330 Hb_000009_330 Hb_001055_030--Hb_000009_330 Hb_000622_250 Hb_000622_250 Hb_001055_030--Hb_000622_250 Hb_127599_010--Hb_004218_090 Hb_000062_080 Hb_000062_080 Hb_127599_010--Hb_000062_080 Hb_000169_170 Hb_000169_170 Hb_127599_010--Hb_000169_170 Hb_006738_050 Hb_006738_050 Hb_127599_010--Hb_006738_050 Hb_000700_060 Hb_000700_060 Hb_127599_010--Hb_000700_060 Hb_127599_010--Hb_006683_040 Hb_001369_770 Hb_001369_770 Hb_005203_020--Hb_001369_770 Hb_005203_020--Hb_127599_010 Hb_000120_520 Hb_000120_520 Hb_005203_020--Hb_000120_520 Hb_000363_370 Hb_000363_370 Hb_005203_020--Hb_000363_370 Hb_012725_040 Hb_012725_040 Hb_005203_020--Hb_012725_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.57852 6.60022 1.27253 2.0484 2.68241 2.84127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.955175 1.92955 0.906131 2.54255 0.599849

CAGE analysis