Hb_000152_640

Information

Type -
Description -
Location Contig152: 537402-541534
Sequence    

Annotation

kegg
ID rcu:RCOM_1500220
description multicopper oxidase, putative (EC:1.10.3.3)
nr
ID XP_012090430.1
description PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
swissprot
ID Q9FHN6
description Monocopper oxidase-like protein SKS2 OS=Arabidopsis thaliana GN=SKS2 PE=1 SV=1
trembl
ID A0A067JF04
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26248 PE=4 SV=1
Gene Ontology
ID GO:0005507
description monocopper oxidase-like protein sks1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13026: 537389-537767 , PASA_asmbl_13027: 540056-541381
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_640 0.0 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
2 Hb_000120_520 0.1017251585 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
3 Hb_005054_310 0.1167406159 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
4 Hb_000056_300 0.1209587986 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
5 Hb_005203_020 0.1271162388 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
6 Hb_167381_020 0.1275853808 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
7 Hb_000836_370 0.1280514163 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
8 Hb_178127_010 0.1289323525 - - Ubiquitin ligase SINAT3, putative [Ricinus communis]
9 Hb_000175_350 0.1296162423 - - phopholipase d alpha, putative [Ricinus communis]
10 Hb_128695_030 0.1299028791 - - heat shock protein, putative [Ricinus communis]
11 Hb_013749_020 0.1443082822 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
12 Hb_021576_140 0.1446444864 - - PREDICTED: protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION-like [Jatropha curcas]
13 Hb_002942_110 0.1454124649 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]
14 Hb_000059_200 0.1460867821 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
15 Hb_003228_030 0.1461689153 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
16 Hb_000958_150 0.1463417057 - - Actin, putative [Ricinus communis]
17 Hb_073171_090 0.1465139496 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
18 Hb_008406_040 0.1466044582 - - -
19 Hb_005000_300 0.1466985583 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]
20 Hb_000120_420 0.1477464019 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_000152_640 Hb_000152_640 Hb_000120_520 Hb_000120_520 Hb_000152_640--Hb_000120_520 Hb_005054_310 Hb_005054_310 Hb_000152_640--Hb_005054_310 Hb_000056_300 Hb_000056_300 Hb_000152_640--Hb_000056_300 Hb_005203_020 Hb_005203_020 Hb_000152_640--Hb_005203_020 Hb_167381_020 Hb_167381_020 Hb_000152_640--Hb_167381_020 Hb_000836_370 Hb_000836_370 Hb_000152_640--Hb_000836_370 Hb_000958_150 Hb_000958_150 Hb_000120_520--Hb_000958_150 Hb_000700_060 Hb_000700_060 Hb_000120_520--Hb_000700_060 Hb_002284_170 Hb_002284_170 Hb_000120_520--Hb_002284_170 Hb_013749_020 Hb_013749_020 Hb_000120_520--Hb_013749_020 Hb_056987_010 Hb_056987_010 Hb_000120_520--Hb_056987_010 Hb_005054_310--Hb_000836_370 Hb_003228_030 Hb_003228_030 Hb_005054_310--Hb_003228_030 Hb_005054_310--Hb_000056_300 Hb_000227_310 Hb_000227_310 Hb_005054_310--Hb_000227_310 Hb_128695_030 Hb_128695_030 Hb_005054_310--Hb_128695_030 Hb_001484_100 Hb_001484_100 Hb_005054_310--Hb_001484_100 Hb_000056_300--Hb_128695_030 Hb_003078_030 Hb_003078_030 Hb_000056_300--Hb_003078_030 Hb_000056_300--Hb_000836_370 Hb_005649_090 Hb_005649_090 Hb_000056_300--Hb_005649_090 Hb_005000_300 Hb_005000_300 Hb_000056_300--Hb_005000_300 Hb_001369_770 Hb_001369_770 Hb_005203_020--Hb_001369_770 Hb_127599_010 Hb_127599_010 Hb_005203_020--Hb_127599_010 Hb_005203_020--Hb_000120_520 Hb_000123_330 Hb_000123_330 Hb_005203_020--Hb_000123_330 Hb_000363_370 Hb_000363_370 Hb_005203_020--Hb_000363_370 Hb_012725_040 Hb_012725_040 Hb_005203_020--Hb_012725_040 Hb_001307_010 Hb_001307_010 Hb_167381_020--Hb_001307_010 Hb_000116_510 Hb_000116_510 Hb_167381_020--Hb_000116_510 Hb_000120_420 Hb_000120_420 Hb_167381_020--Hb_000120_420 Hb_118840_050 Hb_118840_050 Hb_167381_020--Hb_118840_050 Hb_000336_110 Hb_000336_110 Hb_167381_020--Hb_000336_110 Hb_011909_060 Hb_011909_060 Hb_167381_020--Hb_011909_060 Hb_000836_370--Hb_005000_300 Hb_001231_080 Hb_001231_080 Hb_000836_370--Hb_001231_080 Hb_000836_370--Hb_003078_030 Hb_000836_370--Hb_001484_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.23581 7.97072 3.71332 3.80054 4.15818 3.48622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.803258 0.505619 0.88996 2.05498 0.534038

CAGE analysis