Hb_006111_030

Information

Type -
Description -
Location Contig6111: 15177-37703
Sequence    

Annotation

kegg
ID rcu:RCOM_1077540
description phosphatidylcholine-sterol O-acyltransferase, putative
nr
ID XP_012085803.1
description PREDICTED: phospholipase A(1) LCAT3 isoform X1 [Jatropha curcas]
swissprot
ID Q93V61
description Phospholipase A(1) LCAT3 OS=Arabidopsis thaliana GN=LCAT3 PE=1 SV=1
trembl
ID B9RM34
description Phosphatidylcholine-sterol O-acyltransferase, putative OS=Ricinus communis GN=RCOM_1077540 PE=4 SV=1
Gene Ontology
ID GO:0008374
description phospholipase a lcat3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50989: 19830-37733
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006111_030 0.0 - - PREDICTED: phospholipase A(1) LCAT3 isoform X1 [Jatropha curcas]
2 Hb_001865_060 0.1009393788 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
3 Hb_012725_040 0.109320568 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
4 Hb_000071_140 0.1260141941 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
5 Hb_001258_150 0.1264133211 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
6 Hb_004032_310 0.1268041148 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
7 Hb_002485_040 0.1278297899 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
8 Hb_125126_010 0.1333814892 desease resistance Gene Name: NB-ARC resistance family protein [Populus trichocarpa]
9 Hb_000062_080 0.1341211871 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
10 Hb_001489_120 0.1352408815 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
11 Hb_003078_030 0.1364460612 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
12 Hb_000186_200 0.1386368555 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
13 Hb_000448_060 0.1468012242 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
14 Hb_003752_120 0.1483289714 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
15 Hb_003226_110 0.1483295708 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
16 Hb_185513_010 0.148538997 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000270_230 0.1487226278 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
18 Hb_001141_360 0.1493513989 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
19 Hb_002534_050 0.1519122134 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
20 Hb_000123_350 0.1521677334 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_006111_030 Hb_006111_030 Hb_001865_060 Hb_001865_060 Hb_006111_030--Hb_001865_060 Hb_012725_040 Hb_012725_040 Hb_006111_030--Hb_012725_040 Hb_000071_140 Hb_000071_140 Hb_006111_030--Hb_000071_140 Hb_001258_150 Hb_001258_150 Hb_006111_030--Hb_001258_150 Hb_004032_310 Hb_004032_310 Hb_006111_030--Hb_004032_310 Hb_002485_040 Hb_002485_040 Hb_006111_030--Hb_002485_040 Hb_001141_360 Hb_001141_360 Hb_001865_060--Hb_001141_360 Hb_001865_060--Hb_012725_040 Hb_000062_080 Hb_000062_080 Hb_001865_060--Hb_000062_080 Hb_001865_060--Hb_002485_040 Hb_003494_060 Hb_003494_060 Hb_001865_060--Hb_003494_060 Hb_001865_060--Hb_004032_310 Hb_185513_010 Hb_185513_010 Hb_012725_040--Hb_185513_010 Hb_012725_040--Hb_001258_150 Hb_012725_040--Hb_003494_060 Hb_012725_040--Hb_001141_360 Hb_001489_120 Hb_001489_120 Hb_000071_140--Hb_001489_120 Hb_002534_050 Hb_002534_050 Hb_000071_140--Hb_002534_050 Hb_048755_020 Hb_048755_020 Hb_000071_140--Hb_048755_020 Hb_000069_730 Hb_000069_730 Hb_000071_140--Hb_000069_730 Hb_000071_140--Hb_004032_310 Hb_000071_140--Hb_001258_150 Hb_001258_150--Hb_001489_120 Hb_000803_060 Hb_000803_060 Hb_001258_150--Hb_000803_060 Hb_001258_150--Hb_004032_310 Hb_011360_090 Hb_011360_090 Hb_001258_150--Hb_011360_090 Hb_003752_120 Hb_003752_120 Hb_004032_310--Hb_003752_120 Hb_000448_060 Hb_000448_060 Hb_004032_310--Hb_000448_060 Hb_004032_310--Hb_001489_120 Hb_001662_170 Hb_001662_170 Hb_004032_310--Hb_001662_170 Hb_004994_300 Hb_004994_300 Hb_004032_310--Hb_004994_300 Hb_002915_070 Hb_002915_070 Hb_004032_310--Hb_002915_070 Hb_000123_350 Hb_000123_350 Hb_002485_040--Hb_000123_350 Hb_012082_010 Hb_012082_010 Hb_002485_040--Hb_012082_010 Hb_002774_150 Hb_002774_150 Hb_002485_040--Hb_002774_150 Hb_125126_010 Hb_125126_010 Hb_002485_040--Hb_125126_010 Hb_000896_060 Hb_000896_060 Hb_002485_040--Hb_000896_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.35889 9.0821 2.19063 1.97097 1.26254 1.82622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.59537 0.449298 0.479103 1.16982 1.40592

CAGE analysis