Hb_125126_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig125126: 11244-16088
Sequence    

Annotation

kegg
ID pop:POPTR_0005s03350g
description resistance family protein
nr
ID XP_006382564.1
description resistance family protein [Populus trichocarpa]
swissprot
ID O23530
description Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3
trembl
ID U5GDH5
description Resistance family protein OS=Populus trichocarpa GN=POPTR_0005s03350g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07692: 12290-12643 , PASA_asmbl_07693: 13440-13721 , PASA_asmbl_07694: 15229-15624
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_125126_010 0.0 desease resistance Gene Name: NB-ARC resistance family protein [Populus trichocarpa]
2 Hb_000130_280 0.0823799308 - - PREDICTED: transcription factor GTE3, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_006738_050 0.0929057147 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
4 Hb_004310_040 0.0938523781 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011249_060 0.0957295054 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
6 Hb_005188_040 0.0969158137 - - PREDICTED: protein furry homolog-like [Nicotiana sylvestris]
7 Hb_000123_350 0.0990369602 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
8 Hb_004899_040 0.0995124178 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
9 Hb_012082_010 0.0997602947 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
10 Hb_014834_060 0.1048750047 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
11 Hb_044653_020 0.1048829307 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
12 Hb_000270_230 0.1066004737 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
13 Hb_000540_110 0.1078400128 - - hypothetical protein PRUPE_ppa000777mg [Prunus persica]
14 Hb_002282_060 0.1078499671 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
15 Hb_009028_010 0.1095522272 - - PREDICTED: probable disease resistance protein At1g12280 [Jatropha curcas]
16 Hb_000866_080 0.1113013049 - - PREDICTED: signal peptide peptidase-like 4 isoform X1 [Jatropha curcas]
17 Hb_002485_040 0.1116764966 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
18 Hb_002374_290 0.1116835666 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X1 [Jatropha curcas]
19 Hb_000896_060 0.1122777255 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_004785_030 0.1130425298 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]

Gene co-expression network

sample Hb_125126_010 Hb_125126_010 Hb_000130_280 Hb_000130_280 Hb_125126_010--Hb_000130_280 Hb_006738_050 Hb_006738_050 Hb_125126_010--Hb_006738_050 Hb_004310_040 Hb_004310_040 Hb_125126_010--Hb_004310_040 Hb_011249_060 Hb_011249_060 Hb_125126_010--Hb_011249_060 Hb_005188_040 Hb_005188_040 Hb_125126_010--Hb_005188_040 Hb_000123_350 Hb_000123_350 Hb_125126_010--Hb_000123_350 Hb_004899_040 Hb_004899_040 Hb_000130_280--Hb_004899_040 Hb_012082_010 Hb_012082_010 Hb_000130_280--Hb_012082_010 Hb_011161_020 Hb_011161_020 Hb_000130_280--Hb_011161_020 Hb_000130_280--Hb_011249_060 Hb_009302_030 Hb_009302_030 Hb_000130_280--Hb_009302_030 Hb_000700_060 Hb_000700_060 Hb_006738_050--Hb_000700_060 Hb_002119_090 Hb_002119_090 Hb_006738_050--Hb_002119_090 Hb_004410_070 Hb_004410_070 Hb_006738_050--Hb_004410_070 Hb_000205_240 Hb_000205_240 Hb_006738_050--Hb_000205_240 Hb_007017_070 Hb_007017_070 Hb_006738_050--Hb_007017_070 Hb_006738_050--Hb_004899_040 Hb_002016_060 Hb_002016_060 Hb_004310_040--Hb_002016_060 Hb_000866_080 Hb_000866_080 Hb_004310_040--Hb_000866_080 Hb_004195_120 Hb_004195_120 Hb_004310_040--Hb_004195_120 Hb_010661_020 Hb_010661_020 Hb_004310_040--Hb_010661_020 Hb_004310_040--Hb_011249_060 Hb_015183_100 Hb_015183_100 Hb_004310_040--Hb_015183_100 Hb_001427_150 Hb_001427_150 Hb_011249_060--Hb_001427_150 Hb_011249_060--Hb_009302_030 Hb_011249_060--Hb_004899_040 Hb_009486_160 Hb_009486_160 Hb_011249_060--Hb_009486_160 Hb_002903_140 Hb_002903_140 Hb_011249_060--Hb_002903_140 Hb_011249_060--Hb_015183_100 Hb_002542_130 Hb_002542_130 Hb_005188_040--Hb_002542_130 Hb_004785_030 Hb_004785_030 Hb_005188_040--Hb_004785_030 Hb_001545_150 Hb_001545_150 Hb_005188_040--Hb_001545_150 Hb_011242_060 Hb_011242_060 Hb_005188_040--Hb_011242_060 Hb_000265_090 Hb_000265_090 Hb_005188_040--Hb_000265_090 Hb_009028_010 Hb_009028_010 Hb_005188_040--Hb_009028_010 Hb_000896_060 Hb_000896_060 Hb_000123_350--Hb_000896_060 Hb_002485_040 Hb_002485_040 Hb_000123_350--Hb_002485_040 Hb_014834_060 Hb_014834_060 Hb_000123_350--Hb_014834_060 Hb_000526_060 Hb_000526_060 Hb_000123_350--Hb_000526_060 Hb_003060_090 Hb_003060_090 Hb_000123_350--Hb_003060_090 Hb_000123_350--Hb_012082_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.812426 3.11617 0.97389 0.876523 0.604903 0.925888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.418368 0.536506 0.326198 0.764405 0.857509

CAGE analysis