Hb_000538_190

Information

Type -
Description -
Location Contig538: 197176-201299
Sequence    

Annotation

kegg
ID rcu:RCOM_0763700
description protease C56, putative
nr
ID XP_012074693.1
description PREDICTED: protein DJ-1 homolog D [Jatropha curcas]
swissprot
ID Q9M8R4
description Protein DJ-1 homolog D OS=Arabidopsis thaliana GN=DJ1D PE=1 SV=1
trembl
ID A0A067KTX8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10472 PE=4 SV=1
Gene Ontology
ID GO:0008233
description protein dj-1 homolog d

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47675: 197186-201309
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000538_190 0.0 - - PREDICTED: protein DJ-1 homolog D [Jatropha curcas]
2 Hb_001369_770 0.1013800714 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
3 Hb_020178_050 0.1170265964 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
4 Hb_003525_020 0.1192555509 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002942_110 0.1355359657 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]
6 Hb_004976_060 0.1392943476 - - -
7 Hb_089100_040 0.1412643175 - - PREDICTED: uncharacterized protein LOC105638961 [Jatropha curcas]
8 Hb_000599_130 0.1472242556 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
9 Hb_001699_150 0.1487149607 - - hypothetical protein POPTR_0009s13450g [Populus trichocarpa]
10 Hb_001865_060 0.1496734058 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
11 Hb_000362_090 0.149713426 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
12 Hb_011791_020 0.1513191094 - - hypothetical protein Csa_6G486930 [Cucumis sativus]
13 Hb_001231_080 0.1520030214 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 [Fragaria vesca subsp. vesca]
14 Hb_020178_060 0.1520912492 - - PREDICTED: nucleobase-ascorbate transporter 3 [Jatropha curcas]
15 Hb_048848_010 0.1530074516 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
16 Hb_130389_010 0.1549108954 - - PREDICTED: la protein 1 [Jatropha curcas]
17 Hb_004195_120 0.1577859253 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
18 Hb_005203_020 0.1605701549 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
19 Hb_127599_010 0.1634236067 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
20 Hb_143986_010 0.1634416838 - - PREDICTED: beta-galactosidase [Jatropha curcas]

Gene co-expression network

sample Hb_000538_190 Hb_000538_190 Hb_001369_770 Hb_001369_770 Hb_000538_190--Hb_001369_770 Hb_020178_050 Hb_020178_050 Hb_000538_190--Hb_020178_050 Hb_003525_020 Hb_003525_020 Hb_000538_190--Hb_003525_020 Hb_002942_110 Hb_002942_110 Hb_000538_190--Hb_002942_110 Hb_004976_060 Hb_004976_060 Hb_000538_190--Hb_004976_060 Hb_089100_040 Hb_089100_040 Hb_000538_190--Hb_089100_040 Hb_001369_770--Hb_002942_110 Hb_000599_130 Hb_000599_130 Hb_001369_770--Hb_000599_130 Hb_001369_770--Hb_020178_050 Hb_004195_120 Hb_004195_120 Hb_001369_770--Hb_004195_120 Hb_005203_020 Hb_005203_020 Hb_001369_770--Hb_005203_020 Hb_020178_050--Hb_002942_110 Hb_000448_060 Hb_000448_060 Hb_020178_050--Hb_000448_060 Hb_004324_060 Hb_004324_060 Hb_020178_050--Hb_004324_060 Hb_020178_050--Hb_004195_120 Hb_048848_010 Hb_048848_010 Hb_003525_020--Hb_048848_010 Hb_003525_020--Hb_001369_770 Hb_001584_010 Hb_001584_010 Hb_003525_020--Hb_001584_010 Hb_010261_010 Hb_010261_010 Hb_003525_020--Hb_010261_010 Hb_000362_090 Hb_000362_090 Hb_003525_020--Hb_000362_090 Hb_002942_110--Hb_004195_120 Hb_128695_030 Hb_128695_030 Hb_002942_110--Hb_128695_030 Hb_002942_110--Hb_004324_060 Hb_003895_020 Hb_003895_020 Hb_002942_110--Hb_003895_020 Hb_004976_060--Hb_003525_020 Hb_020178_060 Hb_020178_060 Hb_004976_060--Hb_020178_060 Hb_004976_040 Hb_004976_040 Hb_004976_060--Hb_004976_040 Hb_002903_130 Hb_002903_130 Hb_004976_060--Hb_002903_130 Hb_004976_060--Hb_048848_010 Hb_000189_470 Hb_000189_470 Hb_089100_040--Hb_000189_470 Hb_000866_370 Hb_000866_370 Hb_089100_040--Hb_000866_370 Hb_089100_040--Hb_000362_090 Hb_009897_010 Hb_009897_010 Hb_089100_040--Hb_009897_010 Hb_000216_020 Hb_000216_020 Hb_089100_040--Hb_000216_020 Hb_065500_030 Hb_065500_030 Hb_089100_040--Hb_065500_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
130.991 666.913 152.539 92.6691 163.804 163.82
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.7119 17.3994 22.7725 286.33 62.0015

CAGE analysis