Hb_002903_130

Information

Type -
Description -
Location Contig2903: 157512-162266
Sequence    

Annotation

kegg
ID rcu:RCOM_0935650
description epoxide hydrolase, putative (EC:2.7.10.2)
nr
ID XP_002519030.1
description epoxide hydrolase, putative [Ricinus communis]
swissprot
ID P80299
description Bifunctional epoxide hydrolase 2 OS=Rattus norvegicus GN=Ephx2 PE=1 SV=1
trembl
ID A0A0E0BCA2
description Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1
Gene Ontology
ID GO:0004301
description bifunctional epoxide hydrolase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30449: 157527-159411 , PASA_asmbl_30450: 160808-161110 , PASA_asmbl_30451: 161189-162006 , PASA_asmbl_30453: 162051-163301
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002903_130 0.0 - - epoxide hydrolase, putative [Ricinus communis]
2 Hb_000977_010 0.1152425786 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
3 Hb_020178_060 0.1212297571 - - PREDICTED: nucleobase-ascorbate transporter 3 [Jatropha curcas]
4 Hb_001946_150 0.1312102429 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003640_030 0.1329604705 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
6 Hb_000097_040 0.1384496075 transcription factor TF Family: MYB myb domain protein [Hevea brasiliensis]
7 Hb_000362_110 0.1524044473 - - PREDICTED: uncharacterized protein LOC104612097 isoform X2 [Nelumbo nucifera]
8 Hb_000313_370 0.1627072394 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_048848_010 0.1731757406 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
10 Hb_000022_180 0.1817459708 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
11 Hb_000283_150 0.1841593647 - - Ankyrin repeat family protein [Theobroma cacao]
12 Hb_001351_040 0.1881790711 - - PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic-like [Jatropha curcas]
13 Hb_004126_080 0.1915446405 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
14 Hb_000645_240 0.1930740528 - - AMP dependent ligase, putative [Ricinus communis]
15 Hb_000061_380 0.1946597848 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004976_060 0.1956667783 - - -
17 Hb_000538_190 0.1975185682 - - PREDICTED: protein DJ-1 homolog D [Jatropha curcas]
18 Hb_001699_150 0.1983375599 - - hypothetical protein POPTR_0009s13450g [Populus trichocarpa]
19 Hb_012565_080 0.2024348474 - - serine/threonine kinase, putative [Ricinus communis]
20 Hb_001584_010 0.2044535635 - - kelch repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002903_130 Hb_002903_130 Hb_000977_010 Hb_000977_010 Hb_002903_130--Hb_000977_010 Hb_020178_060 Hb_020178_060 Hb_002903_130--Hb_020178_060 Hb_001946_150 Hb_001946_150 Hb_002903_130--Hb_001946_150 Hb_003640_030 Hb_003640_030 Hb_002903_130--Hb_003640_030 Hb_000097_040 Hb_000097_040 Hb_002903_130--Hb_000097_040 Hb_000362_110 Hb_000362_110 Hb_002903_130--Hb_000362_110 Hb_000313_370 Hb_000313_370 Hb_000977_010--Hb_000313_370 Hb_000977_010--Hb_000362_110 Hb_001351_040 Hb_001351_040 Hb_000977_010--Hb_001351_040 Hb_000189_120 Hb_000189_120 Hb_000977_010--Hb_000189_120 Hb_001584_010 Hb_001584_010 Hb_000977_010--Hb_001584_010 Hb_000283_150 Hb_000283_150 Hb_020178_060--Hb_000283_150 Hb_008948_160 Hb_008948_160 Hb_020178_060--Hb_008948_160 Hb_012565_080 Hb_012565_080 Hb_020178_060--Hb_012565_080 Hb_000538_190 Hb_000538_190 Hb_020178_060--Hb_000538_190 Hb_000521_170 Hb_000521_170 Hb_020178_060--Hb_000521_170 Hb_001946_150--Hb_000362_110 Hb_001946_150--Hb_000313_370 Hb_000866_090 Hb_000866_090 Hb_001946_150--Hb_000866_090 Hb_000645_240 Hb_000645_240 Hb_001946_150--Hb_000645_240 Hb_001799_190 Hb_001799_190 Hb_001946_150--Hb_001799_190 Hb_003640_030--Hb_000362_110 Hb_003640_030--Hb_020178_060 Hb_003640_030--Hb_000283_150 Hb_003640_030--Hb_000977_010 Hb_000061_380 Hb_000061_380 Hb_003640_030--Hb_000061_380 Hb_000097_040--Hb_000977_010 Hb_011618_040 Hb_011618_040 Hb_000097_040--Hb_011618_040 Hb_000556_110 Hb_000556_110 Hb_000097_040--Hb_000556_110 Hb_000097_040--Hb_003640_030 Hb_000097_040--Hb_001946_150 Hb_006717_070 Hb_006717_070 Hb_000362_110--Hb_006717_070 Hb_000395_220 Hb_000395_220 Hb_000362_110--Hb_000395_220 Hb_001780_150 Hb_001780_150 Hb_000362_110--Hb_001780_150 Hb_000362_110--Hb_001799_190 Hb_007426_140 Hb_007426_140 Hb_000362_110--Hb_007426_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.12703 8.32424 1.87788 1.54384 3.38716 2.36818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.480059 0.39571 0.136392 10.4918 1.10199

CAGE analysis