Hb_011618_040

Information

Type -
Description -
Location Contig11618: 41929-42993
Sequence    

Annotation

kegg
ID rcu:RCOM_0894530
description hypothetical protein
nr
ID XP_002517518.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9M8L2
description F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana GN=At1g80440 PE=2 SV=1
trembl
ID B9RUU9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0894530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011618_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000556_110 0.1328400121 - - hypothetical protein POPTR_0014s06790g [Populus trichocarpa]
3 Hb_000670_110 0.1476150897 - - l-asparaginase, putative [Ricinus communis]
4 Hb_000106_070 0.1604633302 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
5 Hb_001454_340 0.1634251287 - - ATDI21 [Manihot esculenta]
6 Hb_003119_070 0.1776486631 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
7 Hb_007416_150 0.1786899399 - - sarcosine oxidase, putative [Ricinus communis]
8 Hb_011970_040 0.1796680871 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001951_030 0.1798980817 - - hypothetical protein JCGZ_04584 [Jatropha curcas]
10 Hb_000976_440 0.1856673108 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_001248_030 0.1872977332 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_000097_040 0.1879997526 transcription factor TF Family: MYB myb domain protein [Hevea brasiliensis]
13 Hb_003677_010 0.1896296043 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
14 Hb_009823_010 0.1897072641 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
15 Hb_004195_110 0.1902294503 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
16 Hb_006711_010 0.1922647195 - - cytoplasmic dynein light chain, putative [Ricinus communis]
17 Hb_133636_010 0.1950990312 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
18 Hb_003299_010 0.1992569516 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
19 Hb_003052_200 0.2027551107 - - hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
20 Hb_000088_160 0.2040302544 - - PREDICTED: uncharacterized protein LOC105629775 [Jatropha curcas]

Gene co-expression network

sample Hb_011618_040 Hb_011618_040 Hb_000556_110 Hb_000556_110 Hb_011618_040--Hb_000556_110 Hb_000670_110 Hb_000670_110 Hb_011618_040--Hb_000670_110 Hb_000106_070 Hb_000106_070 Hb_011618_040--Hb_000106_070 Hb_001454_340 Hb_001454_340 Hb_011618_040--Hb_001454_340 Hb_003119_070 Hb_003119_070 Hb_011618_040--Hb_003119_070 Hb_007416_150 Hb_007416_150 Hb_011618_040--Hb_007416_150 Hb_004195_110 Hb_004195_110 Hb_000556_110--Hb_004195_110 Hb_009823_010 Hb_009823_010 Hb_000556_110--Hb_009823_010 Hb_002311_370 Hb_002311_370 Hb_000556_110--Hb_002311_370 Hb_000098_310 Hb_000098_310 Hb_000556_110--Hb_000098_310 Hb_000025_020 Hb_000025_020 Hb_000556_110--Hb_000025_020 Hb_011970_040 Hb_011970_040 Hb_000670_110--Hb_011970_040 Hb_000670_110--Hb_000106_070 Hb_003052_200 Hb_003052_200 Hb_000670_110--Hb_003052_200 Hb_000670_110--Hb_004195_110 Hb_001248_030 Hb_001248_030 Hb_000670_110--Hb_001248_030 Hb_000106_070--Hb_003052_200 Hb_003299_010 Hb_003299_010 Hb_000106_070--Hb_003299_010 Hb_000106_070--Hb_011970_040 Hb_000106_070--Hb_003119_070 Hb_033006_040 Hb_033006_040 Hb_001454_340--Hb_033006_040 Hb_006711_010 Hb_006711_010 Hb_001454_340--Hb_006711_010 Hb_000380_040 Hb_000380_040 Hb_001454_340--Hb_000380_040 Hb_050484_010 Hb_050484_010 Hb_001454_340--Hb_050484_010 Hb_001454_340--Hb_003119_070 Hb_002007_230 Hb_002007_230 Hb_001454_340--Hb_002007_230 Hb_005663_050 Hb_005663_050 Hb_003119_070--Hb_005663_050 Hb_002003_020 Hb_002003_020 Hb_003119_070--Hb_002003_020 Hb_001838_050 Hb_001838_050 Hb_003119_070--Hb_001838_050 Hb_003031_030 Hb_003031_030 Hb_003119_070--Hb_003031_030 Hb_017866_020 Hb_017866_020 Hb_003119_070--Hb_017866_020 Hb_000616_050 Hb_000616_050 Hb_003119_070--Hb_000616_050 Hb_007416_150--Hb_001248_030 Hb_002304_140 Hb_002304_140 Hb_007416_150--Hb_002304_140 Hb_007416_150--Hb_011970_040 Hb_007416_150--Hb_009823_010 Hb_007416_150--Hb_004195_110 Hb_003576_050 Hb_003576_050 Hb_007416_150--Hb_003576_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.23387 14.4031 0.807852 2.21645 1.15184 1.86718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.234405 0.258117 0.749554 23.5284 0.227286

CAGE analysis