Hb_050484_010

Information

Type -
Description -
Location Contig50484: 26-724
Sequence    

Annotation

kegg
ID ehx:EMIHUDRAFT_41953
description hypothetical protein
nr
ID CBI20589.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q8TDW0
description Volume-regulated anion channel subunit LRRC8C OS=Homo sapiens GN=LRRC8C PE=1 SV=2
trembl
ID D7STI4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g00340 PE=4 SV=1
Gene Ontology
ID GO:0005622
description receptor-like protein kinase hsl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_050484_010 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_129279_020 0.1061306885 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
3 Hb_000236_360 0.138706897 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Prunus mume]
4 Hb_002315_070 0.1414164795 - - PREDICTED: uncharacterized protein LOC105630187 [Jatropha curcas]
5 Hb_001454_340 0.1444184615 - - ATDI21 [Manihot esculenta]
6 Hb_004109_300 0.1447483198 - - hypothetical protein POPTR_0003s21800g [Populus trichocarpa]
7 Hb_001157_150 0.15000718 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
8 Hb_005653_020 0.1511814491 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
9 Hb_000380_040 0.1524156423 - - bel1 homeotic protein, putative [Ricinus communis]
10 Hb_001269_020 0.1525853776 - - PREDICTED: beta-Amyrin Synthase 2-like [Vitis vinifera]
11 Hb_002204_030 0.1549683703 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
12 Hb_006711_010 0.1572712392 - - cytoplasmic dynein light chain, putative [Ricinus communis]
13 Hb_005663_050 0.1598166473 - - amino acid transporter, putative [Ricinus communis]
14 Hb_000951_030 0.1618726959 - - kinase, putative [Ricinus communis]
15 Hb_000334_250 0.1625139154 - - Polygalacturonase precursor, putative [Ricinus communis]
16 Hb_009515_010 0.164180946 transcription factor TF Family: HB hypothetical protein JCGZ_15302 [Jatropha curcas]
17 Hb_003074_070 0.1645319383 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
18 Hb_005218_070 0.1660271449 transcription factor TF Family: MYB PREDICTED: transcription factor RAX3 isoform X2 [Populus euphratica]
19 Hb_047163_010 0.1666271612 - - PREDICTED: periaxin-like [Populus euphratica]
20 Hb_033006_040 0.1668708655 - - sulfate transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_050484_010 Hb_050484_010 Hb_129279_020 Hb_129279_020 Hb_050484_010--Hb_129279_020 Hb_000236_360 Hb_000236_360 Hb_050484_010--Hb_000236_360 Hb_002315_070 Hb_002315_070 Hb_050484_010--Hb_002315_070 Hb_001454_340 Hb_001454_340 Hb_050484_010--Hb_001454_340 Hb_004109_300 Hb_004109_300 Hb_050484_010--Hb_004109_300 Hb_001157_150 Hb_001157_150 Hb_050484_010--Hb_001157_150 Hb_129279_020--Hb_002315_070 Hb_129279_020--Hb_001454_340 Hb_001269_020 Hb_001269_020 Hb_129279_020--Hb_001269_020 Hb_033006_040 Hb_033006_040 Hb_129279_020--Hb_033006_040 Hb_006711_010 Hb_006711_010 Hb_129279_020--Hb_006711_010 Hb_000236_360--Hb_004109_300 Hb_000380_040 Hb_000380_040 Hb_000236_360--Hb_000380_040 Hb_000236_360--Hb_001157_150 Hb_047163_010 Hb_047163_010 Hb_000236_360--Hb_047163_010 Hb_125876_010 Hb_125876_010 Hb_000236_360--Hb_125876_010 Hb_181092_010 Hb_181092_010 Hb_000236_360--Hb_181092_010 Hb_002315_070--Hb_001269_020 Hb_006418_010 Hb_006418_010 Hb_002315_070--Hb_006418_010 Hb_002315_070--Hb_001157_150 Hb_002315_070--Hb_004109_300 Hb_001454_340--Hb_033006_040 Hb_001454_340--Hb_006711_010 Hb_001454_340--Hb_000380_040 Hb_003119_070 Hb_003119_070 Hb_001454_340--Hb_003119_070 Hb_002007_230 Hb_002007_230 Hb_001454_340--Hb_002007_230 Hb_004109_300--Hb_125876_010 Hb_002743_030 Hb_002743_030 Hb_004109_300--Hb_002743_030 Hb_004109_300--Hb_047163_010 Hb_156949_010 Hb_156949_010 Hb_004109_300--Hb_156949_010 Hb_003074_070 Hb_003074_070 Hb_004109_300--Hb_003074_070 Hb_001157_150--Hb_000380_040 Hb_009083_080 Hb_009083_080 Hb_001157_150--Hb_009083_080 Hb_000077_470 Hb_000077_470 Hb_001157_150--Hb_000077_470 Hb_002003_020 Hb_002003_020 Hb_001157_150--Hb_002003_020 Hb_000334_250 Hb_000334_250 Hb_001157_150--Hb_000334_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.22068 0 0.260674 0.0352822 0.0460528
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0637292 0 2.48941 0

CAGE analysis