Hb_006711_010

Information

Type -
Description -
Location Contig6711: 2449-3225
Sequence    

Annotation

kegg
ID rcu:RCOM_1052500
description cytoplasmic dynein light chain, putative
nr
ID XP_002514287.1
description cytoplasmic dynein light chain, putative [Ricinus communis]
swissprot
ID O02414
description Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=1
trembl
ID B9RKP3
description Cytoplasmic dynein light chain, putative OS=Ricinus communis GN=RCOM_1052500 PE=4 SV=1
Gene Ontology
ID GO:0005875
description dynein light chain flagellar outer arm-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53438: 2409-3861
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006711_010 0.0 - - cytoplasmic dynein light chain, putative [Ricinus communis]
2 Hb_000380_040 0.1173807625 - - bel1 homeotic protein, putative [Ricinus communis]
3 Hb_003677_010 0.1185787534 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
4 Hb_001269_020 0.1248729317 - - PREDICTED: beta-Amyrin Synthase 2-like [Vitis vinifera]
5 Hb_058116_010 0.1295468011 - - Cycloartenol synthase, putative [Ricinus communis]
6 Hb_001454_340 0.1305550744 - - ATDI21 [Manihot esculenta]
7 Hb_004109_300 0.1311538466 - - hypothetical protein POPTR_0003s21800g [Populus trichocarpa]
8 Hb_005653_020 0.132369866 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
9 Hb_002007_230 0.1358329234 - - PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
10 Hb_000185_060 0.1375340633 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
11 Hb_011819_030 0.139041779 - - cytochrome P450, putative [Ricinus communis]
12 Hb_000236_360 0.13943847 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Prunus mume]
13 Hb_181092_010 0.1472144233 - - unnamed protein product [Vitis vinifera]
14 Hb_125876_010 0.1473972734 - - unnamed protein product [Vitis vinifera]
15 Hb_005550_070 0.1476379847 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Populus euphratica]
16 Hb_002917_020 0.1515291296 - - predicted protein [Arabidopsis lyrata subsp. lyrata]
17 Hb_156949_010 0.152183997 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
18 Hb_033006_040 0.1547853336 - - sulfate transporter, putative [Ricinus communis]
19 Hb_000300_570 0.1563178877 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
20 Hb_050484_010 0.1572712392 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_006711_010 Hb_006711_010 Hb_000380_040 Hb_000380_040 Hb_006711_010--Hb_000380_040 Hb_003677_010 Hb_003677_010 Hb_006711_010--Hb_003677_010 Hb_001269_020 Hb_001269_020 Hb_006711_010--Hb_001269_020 Hb_058116_010 Hb_058116_010 Hb_006711_010--Hb_058116_010 Hb_001454_340 Hb_001454_340 Hb_006711_010--Hb_001454_340 Hb_004109_300 Hb_004109_300 Hb_006711_010--Hb_004109_300 Hb_000236_360 Hb_000236_360 Hb_000380_040--Hb_000236_360 Hb_001157_150 Hb_001157_150 Hb_000380_040--Hb_001157_150 Hb_009083_080 Hb_009083_080 Hb_000380_040--Hb_009083_080 Hb_181092_010 Hb_181092_010 Hb_000380_040--Hb_181092_010 Hb_000185_060 Hb_000185_060 Hb_000380_040--Hb_000185_060 Hb_033006_040 Hb_033006_040 Hb_000380_040--Hb_033006_040 Hb_005550_070 Hb_005550_070 Hb_003677_010--Hb_005550_070 Hb_005653_020 Hb_005653_020 Hb_003677_010--Hb_005653_020 Hb_000522_040 Hb_000522_040 Hb_003677_010--Hb_000522_040 Hb_002234_150 Hb_002234_150 Hb_003677_010--Hb_002234_150 Hb_001952_110 Hb_001952_110 Hb_003677_010--Hb_001952_110 Hb_001269_020--Hb_181092_010 Hb_002677_010 Hb_002677_010 Hb_001269_020--Hb_002677_010 Hb_001269_020--Hb_000185_060 Hb_156949_010 Hb_156949_010 Hb_001269_020--Hb_156949_010 Hb_032582_010 Hb_032582_010 Hb_001269_020--Hb_032582_010 Hb_000856_350 Hb_000856_350 Hb_001269_020--Hb_000856_350 Hb_011819_030 Hb_011819_030 Hb_058116_010--Hb_011819_030 Hb_000365_300 Hb_000365_300 Hb_058116_010--Hb_000365_300 Hb_003074_070 Hb_003074_070 Hb_058116_010--Hb_003074_070 Hb_002743_030 Hb_002743_030 Hb_058116_010--Hb_002743_030 Hb_002422_040 Hb_002422_040 Hb_058116_010--Hb_002422_040 Hb_001454_340--Hb_033006_040 Hb_001454_340--Hb_000380_040 Hb_050484_010 Hb_050484_010 Hb_001454_340--Hb_050484_010 Hb_003119_070 Hb_003119_070 Hb_001454_340--Hb_003119_070 Hb_002007_230 Hb_002007_230 Hb_001454_340--Hb_002007_230 Hb_125876_010 Hb_125876_010 Hb_004109_300--Hb_125876_010 Hb_004109_300--Hb_002743_030 Hb_047163_010 Hb_047163_010 Hb_004109_300--Hb_047163_010 Hb_004109_300--Hb_000236_360 Hb_004109_300--Hb_156949_010 Hb_004109_300--Hb_003074_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.447757 52.5937 0.0998605 5.02223 0.649442 0.925033
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0955267 0.0750814 2.11239 84.4915 0.730758

CAGE analysis