Hb_002422_040

Information

Type -
Description -
Location Contig2422: 16450-18125
Sequence    

Annotation

kegg
ID pop:POPTR_0016s02350g
description hypothetical protein
nr
ID XP_006373657.1
description hypothetical protein POPTR_0016s02350g [Populus trichocarpa]
swissprot
ID P32110
description Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1
trembl
ID U5FMK1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s02350g PE=3 SV=1
Gene Ontology
ID GO:0004462
description probable glutathione s-transferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25331: 16474-18102
cDNA
(Sanger)
(ID:Location)		 005_F14.ab1: 16742-18027

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002422_040 0.0 - - hypothetical protein POPTR_0016s02350g [Populus trichocarpa]
2 Hb_000365_300 0.1030159376 - - PREDICTED: cytochrome P450 714C2-like [Jatropha curcas]
3 Hb_004185_040 0.1037465911 - - polygalacturonase, putative [Ricinus communis]
4 Hb_002234_150 0.1099999523 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
5 Hb_002311_050 0.112108012 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
6 Hb_004195_040 0.1149715408 - - salicylic acid methyl transferase [Capsicum annuum]
7 Hb_059162_010 0.1172520647 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_012019_030 0.1211148299 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
9 Hb_000813_120 0.1249865662 - - PREDICTED: serine carboxypeptidase-like 18 [Tarenaya hassleriana]
10 Hb_001173_050 0.125664909 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
11 Hb_041769_010 0.1272185872 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
12 Hb_000003_470 0.1287158884 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002758_040 0.1315596152 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_005731_080 0.1316555776 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
15 Hb_011856_010 0.1320985353 - - cytochrome P450, putative [Ricinus communis]
16 Hb_001080_310 0.1336858029 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
17 Hb_025526_090 0.1338553285 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
18 Hb_139460_010 0.1338567114 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
19 Hb_005539_160 0.1340335748 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
20 Hb_003010_040 0.1379200389 - - hypothetical protein AALP_AA7G248200 [Arabis alpina]

Gene co-expression network

sample Hb_002422_040 Hb_002422_040 Hb_000365_300 Hb_000365_300 Hb_002422_040--Hb_000365_300 Hb_004185_040 Hb_004185_040 Hb_002422_040--Hb_004185_040 Hb_002234_150 Hb_002234_150 Hb_002422_040--Hb_002234_150 Hb_002311_050 Hb_002311_050 Hb_002422_040--Hb_002311_050 Hb_004195_040 Hb_004195_040 Hb_002422_040--Hb_004195_040 Hb_059162_010 Hb_059162_010 Hb_002422_040--Hb_059162_010 Hb_000365_300--Hb_002311_050 Hb_005731_080 Hb_005731_080 Hb_000365_300--Hb_005731_080 Hb_001141_170 Hb_001141_170 Hb_000365_300--Hb_001141_170 Hb_001080_310 Hb_001080_310 Hb_000365_300--Hb_001080_310 Hb_012019_030 Hb_012019_030 Hb_000365_300--Hb_012019_030 Hb_004185_040--Hb_004195_040 Hb_004185_040--Hb_012019_030 Hb_001173_050 Hb_001173_050 Hb_004185_040--Hb_001173_050 Hb_011856_010 Hb_011856_010 Hb_004185_040--Hb_011856_010 Hb_139460_010 Hb_139460_010 Hb_004185_040--Hb_139460_010 Hb_000813_120 Hb_000813_120 Hb_004185_040--Hb_000813_120 Hb_002234_150--Hb_001080_310 Hb_002234_150--Hb_002311_050 Hb_041769_010 Hb_041769_010 Hb_002234_150--Hb_041769_010 Hb_002234_150--Hb_000365_300 Hb_002234_150--Hb_005731_080 Hb_000251_100 Hb_000251_100 Hb_002234_150--Hb_000251_100 Hb_002311_050--Hb_005731_080 Hb_002311_050--Hb_001141_170 Hb_002311_050--Hb_012019_030 Hb_002311_050--Hb_004195_040 Hb_002311_050--Hb_000813_120 Hb_004195_040--Hb_012019_030 Hb_004195_040--Hb_001141_170 Hb_004195_040--Hb_139460_010 Hb_004195_040--Hb_000813_120 Hb_004195_040--Hb_005731_080 Hb_047163_010 Hb_047163_010 Hb_059162_010--Hb_047163_010 Hb_011628_030 Hb_011628_030 Hb_059162_010--Hb_011628_030 Hb_059162_010--Hb_041769_010 Hb_059162_010--Hb_004185_040 Hb_002743_030 Hb_002743_030 Hb_059162_010--Hb_002743_030 Hb_059162_010--Hb_004195_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.167851 12.8952 0.883247 1.72274 0.906119 0.405761
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0415227 0 0 47.1851 0

CAGE analysis