Hb_002311_050

Information

Type -
Description -
Location Contig2311: 25671-27177
Sequence    

Annotation

kegg
ID pop:POPTR_0008s10780g
description POPTRDRAFT_820579; hypothetical protein
nr
ID XP_011020466.1
description PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067K6J1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18965 PE=4 SV=1
Gene Ontology
ID GO:0016829
description glycine-rich family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_050 0.0 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
2 Hb_000365_300 0.0797031383 - - PREDICTED: cytochrome P450 714C2-like [Jatropha curcas]
3 Hb_005731_080 0.0806467957 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
4 Hb_001141_170 0.0835053182 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
5 Hb_012019_030 0.0855252477 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
6 Hb_004195_040 0.0882633362 - - salicylic acid methyl transferase [Capsicum annuum]
7 Hb_000813_120 0.0890240171 - - PREDICTED: serine carboxypeptidase-like 18 [Tarenaya hassleriana]
8 Hb_002234_150 0.090261131 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
9 Hb_041769_010 0.0919963627 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
10 Hb_001080_310 0.0924823829 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
11 Hb_000101_050 0.0991917693 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
12 Hb_006478_190 0.0996278451 - - lipid binding protein, putative [Ricinus communis]
13 Hb_004185_040 0.1010931363 - - polygalacturonase, putative [Ricinus communis]
14 Hb_005993_070 0.1032423598 - - lipid binding protein, putative [Ricinus communis]
15 Hb_010712_020 0.1042336955 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
16 Hb_001047_250 0.1055446001 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
17 Hb_000487_170 0.106007673 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
18 Hb_001902_180 0.1073775695 - - PREDICTED: uncharacterized protein LOC105129658 [Populus euphratica]
19 Hb_001114_300 0.1097474695 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
20 Hb_011824_010 0.1105296471 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002311_050 Hb_002311_050 Hb_000365_300 Hb_000365_300 Hb_002311_050--Hb_000365_300 Hb_005731_080 Hb_005731_080 Hb_002311_050--Hb_005731_080 Hb_001141_170 Hb_001141_170 Hb_002311_050--Hb_001141_170 Hb_012019_030 Hb_012019_030 Hb_002311_050--Hb_012019_030 Hb_004195_040 Hb_004195_040 Hb_002311_050--Hb_004195_040 Hb_000813_120 Hb_000813_120 Hb_002311_050--Hb_000813_120 Hb_000365_300--Hb_005731_080 Hb_000365_300--Hb_001141_170 Hb_001080_310 Hb_001080_310 Hb_000365_300--Hb_001080_310 Hb_000365_300--Hb_012019_030 Hb_002422_040 Hb_002422_040 Hb_000365_300--Hb_002422_040 Hb_005993_070 Hb_005993_070 Hb_005731_080--Hb_005993_070 Hb_002743_030 Hb_002743_030 Hb_005731_080--Hb_002743_030 Hb_005731_080--Hb_012019_030 Hb_006478_190 Hb_006478_190 Hb_005731_080--Hb_006478_190 Hb_005731_080--Hb_004195_040 Hb_001141_170--Hb_012019_030 Hb_001114_300 Hb_001114_300 Hb_001141_170--Hb_001114_300 Hb_010712_020 Hb_010712_020 Hb_001141_170--Hb_010712_020 Hb_001141_170--Hb_004195_040 Hb_000859_040 Hb_000859_040 Hb_001141_170--Hb_000859_040 Hb_011824_010 Hb_011824_010 Hb_001141_170--Hb_011824_010 Hb_012019_030--Hb_004195_040 Hb_004185_040 Hb_004185_040 Hb_012019_030--Hb_004185_040 Hb_012019_030--Hb_001114_300 Hb_012019_030--Hb_006478_190 Hb_004195_040--Hb_004185_040 Hb_139460_010 Hb_139460_010 Hb_004195_040--Hb_139460_010 Hb_004195_040--Hb_000813_120 Hb_183700_010 Hb_183700_010 Hb_000813_120--Hb_183700_010 Hb_039342_030 Hb_039342_030 Hb_000813_120--Hb_039342_030 Hb_000813_120--Hb_004185_040 Hb_000813_120--Hb_012019_030 Hb_001173_050 Hb_001173_050 Hb_000813_120--Hb_001173_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.26686 0.242731 0.173289 0.0799256 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 12.6917 0.103353

CAGE analysis