Hb_001080_310

Information

Type -
Description -
Location Contig1080: 271078-276842
Sequence    

Annotation

kegg
ID rcu:RCOM_0557410
description Ent-kaurene synthase A, chloroplast precursor, putative (EC:5.5.1.13)
nr
ID XP_012092234.1
description PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
swissprot
ID O04408
description Ent-copalyl diphosphate synthase, chloroplastic OS=Pisum sativum PE=2 SV=1
trembl
ID A0A067JPI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21925 PE=4 SV=1
Gene Ontology
ID GO:0000287
description ent-copalyl diphosphate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02452: 271046-274150 , PASA_asmbl_02453: 274546-275539
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001080_310 0.0 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
2 Hb_002281_070 0.0774469519 - - hypothetical protein JCGZ_04352 [Jatropha curcas]
3 Hb_002234_150 0.0790851713 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
4 Hb_012019_030 0.0815012743 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
5 Hb_001141_170 0.0815293659 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
6 Hb_001047_250 0.0816132846 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
7 Hb_001999_220 0.0839130785 - - PREDICTED: cytochrome P450 86A1 [Jatropha curcas]
8 Hb_004195_040 0.0871473065 - - salicylic acid methyl transferase [Capsicum annuum]
9 Hb_000251_100 0.0890102314 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
10 Hb_005731_080 0.0897057118 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
11 Hb_002311_050 0.0924823829 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
12 Hb_001114_300 0.0953507214 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
13 Hb_000329_410 0.0972395226 - - Beta-expansin 3 precursor, putative [Ricinus communis]
14 Hb_006478_190 0.0972700801 - - lipid binding protein, putative [Ricinus communis]
15 Hb_000365_300 0.0985808936 - - PREDICTED: cytochrome P450 714C2-like [Jatropha curcas]
16 Hb_010712_020 0.1011553344 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
17 Hb_000905_140 0.1054082607 - - PREDICTED: protein gamma response 1 isoform X2 [Jatropha curcas]
18 Hb_004185_040 0.1080108612 - - polygalacturonase, putative [Ricinus communis]
19 Hb_005511_050 0.1106751378 - - hypothetical protein POPTR_0008s04130g [Populus trichocarpa]
20 Hb_000859_040 0.1140517156 - - Early nodulin 16 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001080_310 Hb_001080_310 Hb_002281_070 Hb_002281_070 Hb_001080_310--Hb_002281_070 Hb_002234_150 Hb_002234_150 Hb_001080_310--Hb_002234_150 Hb_012019_030 Hb_012019_030 Hb_001080_310--Hb_012019_030 Hb_001141_170 Hb_001141_170 Hb_001080_310--Hb_001141_170 Hb_001047_250 Hb_001047_250 Hb_001080_310--Hb_001047_250 Hb_001999_220 Hb_001999_220 Hb_001080_310--Hb_001999_220 Hb_000905_140 Hb_000905_140 Hb_002281_070--Hb_000905_140 Hb_000329_410 Hb_000329_410 Hb_002281_070--Hb_000329_410 Hb_001114_300 Hb_001114_300 Hb_002281_070--Hb_001114_300 Hb_002281_070--Hb_001141_170 Hb_008367_020 Hb_008367_020 Hb_002281_070--Hb_008367_020 Hb_002311_050 Hb_002311_050 Hb_002234_150--Hb_002311_050 Hb_041769_010 Hb_041769_010 Hb_002234_150--Hb_041769_010 Hb_000365_300 Hb_000365_300 Hb_002234_150--Hb_000365_300 Hb_005731_080 Hb_005731_080 Hb_002234_150--Hb_005731_080 Hb_000251_100 Hb_000251_100 Hb_002234_150--Hb_000251_100 Hb_004195_040 Hb_004195_040 Hb_012019_030--Hb_004195_040 Hb_012019_030--Hb_001141_170 Hb_004185_040 Hb_004185_040 Hb_012019_030--Hb_004185_040 Hb_012019_030--Hb_001114_300 Hb_006478_190 Hb_006478_190 Hb_012019_030--Hb_006478_190 Hb_012019_030--Hb_005731_080 Hb_001141_170--Hb_001114_300 Hb_010712_020 Hb_010712_020 Hb_001141_170--Hb_010712_020 Hb_001141_170--Hb_004195_040 Hb_000859_040 Hb_000859_040 Hb_001141_170--Hb_000859_040 Hb_011824_010 Hb_011824_010 Hb_001141_170--Hb_011824_010 Hb_001047_250--Hb_001999_220 Hb_001047_250--Hb_010712_020 Hb_001047_250--Hb_001141_170 Hb_146023_010 Hb_146023_010 Hb_001047_250--Hb_146023_010 Hb_001047_250--Hb_002311_050 Hb_001410_090 Hb_001410_090 Hb_001999_220--Hb_001410_090 Hb_001999_220--Hb_000859_040 Hb_001999_220--Hb_002281_070 Hb_001999_220--Hb_001114_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.48218 0.0691136 0.136852 0.00751687 0.00704101
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0511185 0.0402248 0.0255786 9.76807 0.0285221

CAGE analysis