Hb_000251_100

Information

Type transcription factor
Description TF Family: WRKY
Location Contig251: 131635-133728
Sequence    

Annotation

kegg
ID rcu:RCOM_0634190
description WRKY transcription factor, putative
nr
ID XP_002519733.1
description WRKY transcription factor, putative [Ricinus communis]
swissprot
ID Q8VWJ2
description Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1
trembl
ID B9S164
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_0634190 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 71

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26243: 131876-132249
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000251_100 0.0 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
2 Hb_001080_310 0.0890102314 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
3 Hb_005511_050 0.1054828611 - - hypothetical protein POPTR_0008s04130g [Populus trichocarpa]
4 Hb_002758_040 0.1088386948 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_002234_150 0.1099097684 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
6 Hb_004185_040 0.1101533071 - - polygalacturonase, putative [Ricinus communis]
7 Hb_004195_040 0.1130951021 - - salicylic acid methyl transferase [Capsicum annuum]
8 Hb_001141_170 0.1160904585 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
9 Hb_132880_030 0.1165264369 - - hypothetical protein JCGZ_10325 [Jatropha curcas]
10 Hb_012019_030 0.1168565481 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
11 Hb_000522_040 0.1179288646 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
12 Hb_010712_020 0.1185242379 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
13 Hb_011824_010 0.1198653063 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
14 Hb_139460_010 0.1207506949 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
15 Hb_122574_020 0.1209392633 - - hypothetical protein JCGZ_24076 [Jatropha curcas]
16 Hb_001621_140 0.1215864781 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
17 Hb_002281_070 0.1223110566 - - hypothetical protein JCGZ_04352 [Jatropha curcas]
18 Hb_001999_220 0.1244796095 - - PREDICTED: cytochrome P450 86A1 [Jatropha curcas]
19 Hb_011856_010 0.125936895 - - cytochrome P450, putative [Ricinus communis]
20 Hb_041769_010 0.1276571009 - - hypothetical protein JCGZ_24970 [Jatropha curcas]

Gene co-expression network

sample Hb_000251_100 Hb_000251_100 Hb_001080_310 Hb_001080_310 Hb_000251_100--Hb_001080_310 Hb_005511_050 Hb_005511_050 Hb_000251_100--Hb_005511_050 Hb_002758_040 Hb_002758_040 Hb_000251_100--Hb_002758_040 Hb_002234_150 Hb_002234_150 Hb_000251_100--Hb_002234_150 Hb_004185_040 Hb_004185_040 Hb_000251_100--Hb_004185_040 Hb_004195_040 Hb_004195_040 Hb_000251_100--Hb_004195_040 Hb_002281_070 Hb_002281_070 Hb_001080_310--Hb_002281_070 Hb_001080_310--Hb_002234_150 Hb_012019_030 Hb_012019_030 Hb_001080_310--Hb_012019_030 Hb_001141_170 Hb_001141_170 Hb_001080_310--Hb_001141_170 Hb_001047_250 Hb_001047_250 Hb_001080_310--Hb_001047_250 Hb_001999_220 Hb_001999_220 Hb_001080_310--Hb_001999_220 Hb_132880_030 Hb_132880_030 Hb_005511_050--Hb_132880_030 Hb_000160_230 Hb_000160_230 Hb_005511_050--Hb_000160_230 Hb_007810_140 Hb_007810_140 Hb_005511_050--Hb_007810_140 Hb_039342_030 Hb_039342_030 Hb_005511_050--Hb_039342_030 Hb_005511_050--Hb_001999_220 Hb_000859_040 Hb_000859_040 Hb_005511_050--Hb_000859_040 Hb_016172_010 Hb_016172_010 Hb_002758_040--Hb_016172_010 Hb_010712_020 Hb_010712_020 Hb_002758_040--Hb_010712_020 Hb_002758_040--Hb_000160_230 Hb_002758_040--Hb_001999_220 Hb_027402_120 Hb_027402_120 Hb_002758_040--Hb_027402_120 Hb_002758_040--Hb_007810_140 Hb_002311_050 Hb_002311_050 Hb_002234_150--Hb_002311_050 Hb_041769_010 Hb_041769_010 Hb_002234_150--Hb_041769_010 Hb_000365_300 Hb_000365_300 Hb_002234_150--Hb_000365_300 Hb_005731_080 Hb_005731_080 Hb_002234_150--Hb_005731_080 Hb_004185_040--Hb_004195_040 Hb_004185_040--Hb_012019_030 Hb_001173_050 Hb_001173_050 Hb_004185_040--Hb_001173_050 Hb_011856_010 Hb_011856_010 Hb_004185_040--Hb_011856_010 Hb_139460_010 Hb_139460_010 Hb_004185_040--Hb_139460_010 Hb_000813_120 Hb_000813_120 Hb_004185_040--Hb_000813_120 Hb_004195_040--Hb_012019_030 Hb_004195_040--Hb_001141_170 Hb_004195_040--Hb_139460_010 Hb_004195_040--Hb_000813_120 Hb_004195_040--Hb_005731_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0456282 3.28019 0.0657064 0.516533 0 0.0120741
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.111483 0.197349 0 13.4356 0.046054

CAGE analysis