Hb_005511_050

Information

Type -
Description -
Location Contig5511: 39855-43317
Sequence    

Annotation

kegg
ID pop:POPTR_0008s04130g
description POPTRDRAFT_872243; hypothetical protein
nr
ID XP_002312023.1
description hypothetical protein POPTR_0008s04130g [Populus trichocarpa]
swissprot
ID Q8S8K6
description Serine carboxypeptidase-like 28 OS=Arabidopsis thaliana GN=SCPL28 PE=2 SV=2
trembl
ID B9HLM9
description Carboxypeptidase OS=Populus trichocarpa GN=POPTR_0008s04130g PE=3 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005511_050 0.0 - - hypothetical protein POPTR_0008s04130g [Populus trichocarpa]
2 Hb_132880_030 0.0528381222 - - hypothetical protein JCGZ_10325 [Jatropha curcas]
3 Hb_000160_230 0.0942670414 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
4 Hb_007810_140 0.0968960472 - - Ankyrin repeat-containing protein [Medicago truncatula]
5 Hb_039342_030 0.0997056917 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001999_220 0.1006172833 - - PREDICTED: cytochrome P450 86A1 [Jatropha curcas]
7 Hb_000859_040 0.1010796589 - - Early nodulin 16 precursor, putative [Ricinus communis]
8 Hb_002758_040 0.1020961678 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_139460_010 0.1021396302 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
10 Hb_002615_050 0.1026124599 - - ATP-binding cassette transporter, putative [Ricinus communis]
11 Hb_011824_010 0.1026827292 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
12 Hb_016172_010 0.1051607592 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
13 Hb_012019_030 0.1053336771 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
14 Hb_000251_100 0.1054828611 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
15 Hb_004195_040 0.1059263138 - - salicylic acid methyl transferase [Capsicum annuum]
16 Hb_011856_010 0.1066343091 - - cytochrome P450, putative [Ricinus communis]
17 Hb_006196_020 0.1081773983 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100-like [Populus euphratica]
18 Hb_010712_020 0.1090789906 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
19 Hb_001410_090 0.1098855804 - - transferase, putative [Ricinus communis]
20 Hb_001080_310 0.1106751378 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_005511_050 Hb_005511_050 Hb_132880_030 Hb_132880_030 Hb_005511_050--Hb_132880_030 Hb_000160_230 Hb_000160_230 Hb_005511_050--Hb_000160_230 Hb_007810_140 Hb_007810_140 Hb_005511_050--Hb_007810_140 Hb_039342_030 Hb_039342_030 Hb_005511_050--Hb_039342_030 Hb_001999_220 Hb_001999_220 Hb_005511_050--Hb_001999_220 Hb_000859_040 Hb_000859_040 Hb_005511_050--Hb_000859_040 Hb_000220_160 Hb_000220_160 Hb_132880_030--Hb_000220_160 Hb_000251_100 Hb_000251_100 Hb_132880_030--Hb_000251_100 Hb_006478_180 Hb_006478_180 Hb_132880_030--Hb_006478_180 Hb_001080_310 Hb_001080_310 Hb_132880_030--Hb_001080_310 Hb_112082_030 Hb_112082_030 Hb_132880_030--Hb_112082_030 Hb_000160_230--Hb_007810_140 Hb_000160_230--Hb_000859_040 Hb_002615_050 Hb_002615_050 Hb_000160_230--Hb_002615_050 Hb_006196_020 Hb_006196_020 Hb_000160_230--Hb_006196_020 Hb_011824_010 Hb_011824_010 Hb_000160_230--Hb_011824_010 Hb_010712_020 Hb_010712_020 Hb_000160_230--Hb_010712_020 Hb_007810_140--Hb_000859_040 Hb_007810_140--Hb_002615_050 Hb_007810_140--Hb_006196_020 Hb_007810_140--Hb_011824_010 Hb_139460_010 Hb_139460_010 Hb_007810_140--Hb_139460_010 Hb_016172_010 Hb_016172_010 Hb_039342_030--Hb_016172_010 Hb_039342_030--Hb_006196_020 Hb_008705_070 Hb_008705_070 Hb_039342_030--Hb_008705_070 Hb_042664_010 Hb_042664_010 Hb_039342_030--Hb_042664_010 Hb_039342_030--Hb_002615_050 Hb_039342_030--Hb_000160_230 Hb_001410_090 Hb_001410_090 Hb_001999_220--Hb_001410_090 Hb_001999_220--Hb_001080_310 Hb_001999_220--Hb_000859_040 Hb_001047_250 Hb_001047_250 Hb_001999_220--Hb_001047_250 Hb_002281_070 Hb_002281_070 Hb_001999_220--Hb_002281_070 Hb_001114_300 Hb_001114_300 Hb_001999_220--Hb_001114_300 Hb_000859_040--Hb_001410_090 Hb_000859_040--Hb_001114_300 Hb_000859_040--Hb_002615_050 Hb_000859_040--Hb_006196_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.257467 0.0210167 0.0329442 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0253064 0 1.44501 0

CAGE analysis