Hb_000220_160

Information

Type -
Description -
Location Contig220: 274515-277820
Sequence    

Annotation

kegg
ID -
description -
nr
ID KJB21024.1
description hypothetical protein B456_003G184800 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2QMM8
description Gossypium raimondii chromosome 3, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_003G184800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000220_160 0.0 - - hypothetical protein B456_003G184800 [Gossypium raimondii]
2 Hb_132880_030 0.0992306657 - - hypothetical protein JCGZ_10325 [Jatropha curcas]
3 Hb_000597_110 0.1354023653 - - PREDICTED: VQ motif-containing protein 22-like [Jatropha curcas]
4 Hb_032631_010 0.13716224 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
5 Hb_002874_080 0.1378312276 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
6 Hb_005511_050 0.1404842171 - - hypothetical protein POPTR_0008s04130g [Populus trichocarpa]
7 Hb_031862_240 0.157827495 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
8 Hb_005257_020 0.1604007772 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
9 Hb_006478_180 0.1612344172 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
10 Hb_006478_190 0.1651108054 - - lipid binding protein, putative [Ricinus communis]
11 Hb_006452_050 0.1678570667 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
12 Hb_000640_270 0.1701960469 - - PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase 30 [Jatropha curcas]
13 Hb_001080_310 0.1701986544 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
14 Hb_001081_020 0.1718441741 - - Cytochrome P450 76C2 [Triticum urartu]
15 Hb_117464_010 0.1760255935 - - PREDICTED: flavone 3'-O-methyltransferase 1-like [Jatropha curcas]
16 Hb_008160_020 0.1766710912 - - PREDICTED: AT-hook motif nuclear-localized protein 23-like isoform X1 [Jatropha curcas]
17 Hb_002234_150 0.1767757073 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
18 Hb_000813_120 0.1774313261 - - PREDICTED: serine carboxypeptidase-like 18 [Tarenaya hassleriana]
19 Hb_001999_220 0.1779082727 - - PREDICTED: cytochrome P450 86A1 [Jatropha curcas]
20 Hb_000329_410 0.1784294543 - - Beta-expansin 3 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000220_160 Hb_000220_160 Hb_132880_030 Hb_132880_030 Hb_000220_160--Hb_132880_030 Hb_000597_110 Hb_000597_110 Hb_000220_160--Hb_000597_110 Hb_032631_010 Hb_032631_010 Hb_000220_160--Hb_032631_010 Hb_002874_080 Hb_002874_080 Hb_000220_160--Hb_002874_080 Hb_005511_050 Hb_005511_050 Hb_000220_160--Hb_005511_050 Hb_031862_240 Hb_031862_240 Hb_000220_160--Hb_031862_240 Hb_132880_030--Hb_005511_050 Hb_000251_100 Hb_000251_100 Hb_132880_030--Hb_000251_100 Hb_006478_180 Hb_006478_180 Hb_132880_030--Hb_006478_180 Hb_001080_310 Hb_001080_310 Hb_132880_030--Hb_001080_310 Hb_112082_030 Hb_112082_030 Hb_132880_030--Hb_112082_030 Hb_000597_110--Hb_032631_010 Hb_001952_110 Hb_001952_110 Hb_000597_110--Hb_001952_110 Hb_001951_090 Hb_001951_090 Hb_000597_110--Hb_001951_090 Hb_003677_010 Hb_003677_010 Hb_000597_110--Hb_003677_010 Hb_000597_110--Hb_132880_030 Hb_032631_010--Hb_132880_030 Hb_001856_090 Hb_001856_090 Hb_032631_010--Hb_001856_090 Hb_032631_010--Hb_001951_090 Hb_006452_050 Hb_006452_050 Hb_032631_010--Hb_006452_050 Hb_110822_020 Hb_110822_020 Hb_002874_080--Hb_110822_020 Hb_002081_250 Hb_002081_250 Hb_002874_080--Hb_002081_250 Hb_170761_010 Hb_170761_010 Hb_002874_080--Hb_170761_010 Hb_000286_250 Hb_000286_250 Hb_002874_080--Hb_000286_250 Hb_002200_010 Hb_002200_010 Hb_002874_080--Hb_002200_010 Hb_000057_030 Hb_000057_030 Hb_002874_080--Hb_000057_030 Hb_000160_230 Hb_000160_230 Hb_005511_050--Hb_000160_230 Hb_007810_140 Hb_007810_140 Hb_005511_050--Hb_007810_140 Hb_039342_030 Hb_039342_030 Hb_005511_050--Hb_039342_030 Hb_001999_220 Hb_001999_220 Hb_005511_050--Hb_001999_220 Hb_000859_040 Hb_000859_040 Hb_005511_050--Hb_000859_040 Hb_006478_190 Hb_006478_190 Hb_031862_240--Hb_006478_190 Hb_006124_010 Hb_006124_010 Hb_031862_240--Hb_006124_010 Hb_161981_020 Hb_161981_020 Hb_031862_240--Hb_161981_020 Hb_021931_030 Hb_021931_030 Hb_031862_240--Hb_021931_030 Hb_176138_010 Hb_176138_010 Hb_031862_240--Hb_176138_010 Hb_006810_080 Hb_006810_080 Hb_031862_240--Hb_006810_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.338239 0.0328625 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0787728 0 1.29179 0

CAGE analysis