Hb_001856_090

Information

Type -
Description -
Location Contig1856: 115069-120376
Sequence    

Annotation

kegg
ID osa:9271833
description Os08g0345500
nr
ID XP_007049093.1
description Cellulose synthase-like B3, putative isoform 2 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID M1B1E1
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013398 PE=4 SV=1
Gene Ontology
ID GO:0016020
description cellulose synthase a catalytic subunit 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001856_090 0.0 - - Cellulose synthase-like B3, putative isoform 2 [Theobroma cacao]
2 Hb_001832_020 0.1383975335 - - PREDICTED: uncharacterized protein LOC104584029 [Brachypodium distachyon]
3 Hb_032631_010 0.1534373169 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
4 Hb_001211_020 0.1642750207 transcription factor TF Family: MYB hypothetical protein POPTR_0002s11440g [Populus trichocarpa]
5 Hb_001085_100 0.1682530082 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
6 Hb_000597_110 0.1916681096 - - PREDICTED: VQ motif-containing protein 22-like [Jatropha curcas]
7 Hb_000220_160 0.1988797865 - - hypothetical protein B456_003G184800 [Gossypium raimondii]
8 Hb_002315_070 0.2156823044 - - PREDICTED: uncharacterized protein LOC105630187 [Jatropha curcas]
9 Hb_000836_510 0.2339800241 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002874_080 0.23849416 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
11 Hb_129279_020 0.2437739109 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
12 Hb_005656_090 0.2500711789 transcription factor TF Family: NAC hypothetical protein CICLE_v10008885mg [Citrus clementina]
13 Hb_010139_010 0.2500823282 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
14 Hb_002621_020 0.250265908 - - -
15 Hb_004918_040 0.2503142105 - - conserved hypothetical protein [Ricinus communis]
16 Hb_132880_030 0.2503783326 - - hypothetical protein JCGZ_10325 [Jatropha curcas]
17 Hb_003735_010 0.250415603 - - -
18 Hb_000703_310 0.2504208417 - - -
19 Hb_008397_020 0.2504227756 - - polyprotein [Oryza australiensis]
20 Hb_001719_030 0.2504607792 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]

Gene co-expression network

sample Hb_001856_090 Hb_001856_090 Hb_001832_020 Hb_001832_020 Hb_001856_090--Hb_001832_020 Hb_032631_010 Hb_032631_010 Hb_001856_090--Hb_032631_010 Hb_001211_020 Hb_001211_020 Hb_001856_090--Hb_001211_020 Hb_001085_100 Hb_001085_100 Hb_001856_090--Hb_001085_100 Hb_000597_110 Hb_000597_110 Hb_001856_090--Hb_000597_110 Hb_000220_160 Hb_000220_160 Hb_001856_090--Hb_000220_160 Hb_001832_020--Hb_001085_100 Hb_008479_020 Hb_008479_020 Hb_001832_020--Hb_008479_020 Hb_027472_230 Hb_027472_230 Hb_001832_020--Hb_027472_230 Hb_001832_020--Hb_032631_010 Hb_001045_050 Hb_001045_050 Hb_001832_020--Hb_001045_050 Hb_032631_010--Hb_000597_110 Hb_032631_010--Hb_000220_160 Hb_132880_030 Hb_132880_030 Hb_032631_010--Hb_132880_030 Hb_001951_090 Hb_001951_090 Hb_032631_010--Hb_001951_090 Hb_006452_050 Hb_006452_050 Hb_032631_010--Hb_006452_050 Hb_001269_020 Hb_001269_020 Hb_001211_020--Hb_001269_020 Hb_004918_040 Hb_004918_040 Hb_001211_020--Hb_004918_040 Hb_003735_010 Hb_003735_010 Hb_001211_020--Hb_003735_010 Hb_008397_020 Hb_008397_020 Hb_001211_020--Hb_008397_020 Hb_001719_030 Hb_001719_030 Hb_001211_020--Hb_001719_030 Hb_001085_100--Hb_008479_020 Hb_009813_080 Hb_009813_080 Hb_001085_100--Hb_009813_080 Hb_002311_170 Hb_002311_170 Hb_001085_100--Hb_002311_170 Hb_001085_100--Hb_027472_230 Hb_001952_110 Hb_001952_110 Hb_000597_110--Hb_001952_110 Hb_000597_110--Hb_000220_160 Hb_000597_110--Hb_001951_090 Hb_003677_010 Hb_003677_010 Hb_000597_110--Hb_003677_010 Hb_000597_110--Hb_132880_030 Hb_000220_160--Hb_132880_030 Hb_002874_080 Hb_002874_080 Hb_000220_160--Hb_002874_080 Hb_005511_050 Hb_005511_050 Hb_000220_160--Hb_005511_050 Hb_031862_240 Hb_031862_240 Hb_000220_160--Hb_031862_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.147248 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0569342 0 0.271972 0

CAGE analysis