Hb_000597_110

Information

Type -
Description -
Location Contig597: 142068-142760
Sequence    

Annotation

kegg
ID pop:POPTR_0006s00810g
description POPTRDRAFT_560114; VQ motif-containing family protein
nr
ID XP_012066426.1
description PREDICTED: VQ motif-containing protein 22-like [Jatropha curcas]
swissprot
ID Q9LIE6
description VQ motif-containing protein 22 OS=Arabidopsis thaliana GN=VQ22 PE=2 SV=1
trembl
ID A0A067LFD1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00483 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000597_110 0.0 - - PREDICTED: VQ motif-containing protein 22-like [Jatropha curcas]
2 Hb_032631_010 0.1125516745 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
3 Hb_001952_110 0.1284147613 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
4 Hb_000220_160 0.1354023653 - - hypothetical protein B456_003G184800 [Gossypium raimondii]
5 Hb_001951_090 0.1382630922 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
6 Hb_003677_010 0.1505211004 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
7 Hb_132880_030 0.1524478574 - - hypothetical protein JCGZ_10325 [Jatropha curcas]
8 Hb_002234_150 0.155410784 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
9 Hb_006452_050 0.1587359172 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
10 Hb_000251_100 0.1651220598 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
11 Hb_001080_310 0.1661117031 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
12 Hb_005257_020 0.166344458 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
13 Hb_000917_150 0.1698065139 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005550_070 0.1710180765 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Populus euphratica]
15 Hb_002917_020 0.1782253638 - - predicted protein [Arabidopsis lyrata subsp. lyrata]
16 Hb_012019_020 0.1808666236 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
17 Hb_001211_020 0.1821164508 transcription factor TF Family: MYB hypothetical protein POPTR_0002s11440g [Populus trichocarpa]
18 Hb_005731_080 0.1824158045 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
19 Hb_005993_070 0.1843446238 - - lipid binding protein, putative [Ricinus communis]
20 Hb_011819_030 0.1849690541 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_000597_110 Hb_000597_110 Hb_032631_010 Hb_032631_010 Hb_000597_110--Hb_032631_010 Hb_001952_110 Hb_001952_110 Hb_000597_110--Hb_001952_110 Hb_000220_160 Hb_000220_160 Hb_000597_110--Hb_000220_160 Hb_001951_090 Hb_001951_090 Hb_000597_110--Hb_001951_090 Hb_003677_010 Hb_003677_010 Hb_000597_110--Hb_003677_010 Hb_132880_030 Hb_132880_030 Hb_000597_110--Hb_132880_030 Hb_032631_010--Hb_000220_160 Hb_032631_010--Hb_132880_030 Hb_001856_090 Hb_001856_090 Hb_032631_010--Hb_001856_090 Hb_032631_010--Hb_001951_090 Hb_006452_050 Hb_006452_050 Hb_032631_010--Hb_006452_050 Hb_001952_110--Hb_001951_090 Hb_012019_020 Hb_012019_020 Hb_001952_110--Hb_012019_020 Hb_001596_040 Hb_001596_040 Hb_001952_110--Hb_001596_040 Hb_000101_050 Hb_000101_050 Hb_001952_110--Hb_000101_050 Hb_008020_010 Hb_008020_010 Hb_001952_110--Hb_008020_010 Hb_005550_070 Hb_005550_070 Hb_001952_110--Hb_005550_070 Hb_000220_160--Hb_132880_030 Hb_002874_080 Hb_002874_080 Hb_000220_160--Hb_002874_080 Hb_005511_050 Hb_005511_050 Hb_000220_160--Hb_005511_050 Hb_031862_240 Hb_031862_240 Hb_000220_160--Hb_031862_240 Hb_002917_020 Hb_002917_020 Hb_001951_090--Hb_002917_020 Hb_001951_090--Hb_008020_010 Hb_000917_150 Hb_000917_150 Hb_001951_090--Hb_000917_150 Hb_002917_030 Hb_002917_030 Hb_001951_090--Hb_002917_030 Hb_001951_090--Hb_012019_020 Hb_006711_010 Hb_006711_010 Hb_003677_010--Hb_006711_010 Hb_003677_010--Hb_005550_070 Hb_005653_020 Hb_005653_020 Hb_003677_010--Hb_005653_020 Hb_000522_040 Hb_000522_040 Hb_003677_010--Hb_000522_040 Hb_002234_150 Hb_002234_150 Hb_003677_010--Hb_002234_150 Hb_003677_010--Hb_001952_110 Hb_132880_030--Hb_005511_050 Hb_000251_100 Hb_000251_100 Hb_132880_030--Hb_000251_100 Hb_006478_180 Hb_006478_180 Hb_132880_030--Hb_006478_180 Hb_001080_310 Hb_001080_310 Hb_132880_030--Hb_001080_310 Hb_112082_030 Hb_112082_030 Hb_132880_030--Hb_112082_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.205489 48.2354 3.18984 1.44774 0 0.0315125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.31275 8.3204 1.03461 119.196 0.50962

CAGE analysis