Hb_002874_080

Information

Type transcription factor
Description TF Family: NAC
Location Contig2874: 56400-58170
Sequence    

Annotation

kegg
ID rcu:RCOM_0205110
description transcription factor, putative
nr
ID XP_002527980.1
description transcription factor, putative [Ricinus communis]
swissprot
ID O04017
description Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1
trembl
ID B9SPR1
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0205110 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein cup-shaped cotyledon 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002874_080 0.0 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
2 Hb_110822_020 0.0701953067 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
3 Hb_002081_250 0.0702116376 - - hypothetical protein POPTR_0009s08940g [Populus trichocarpa]
4 Hb_170761_010 0.0702150271 - - PREDICTED: uncharacterized protein LOC105787794 [Gossypium raimondii]
5 Hb_000286_250 0.0702378184 desease resistance Gene Name: NB-ARC -
6 Hb_002200_010 0.0703319042 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
7 Hb_000057_030 0.0703660554 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_021931_030 0.0709909897 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
9 Hb_161981_020 0.0719513873 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_011495_020 0.0722758747 - - Pectinesterase-2 precursor, putative [Ricinus communis]
11 Hb_006124_010 0.0737211298 - - -
12 Hb_176138_010 0.0783335479 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
13 Hb_006810_080 0.0784398362 - - hypothetical protein EUGRSUZ_C015472, partial [Eucalyptus grandis]
14 Hb_022693_100 0.0807674163 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
15 Hb_000866_480 0.0812032422 - - -
16 Hb_000329_410 0.0851233703 - - Beta-expansin 3 precursor, putative [Ricinus communis]
17 Hb_180483_010 0.0853493372 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_005780_010 0.0856820412 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
19 Hb_169426_010 0.0858495315 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_009230_030 0.0858745942 - - -

Gene co-expression network

sample Hb_002874_080 Hb_002874_080 Hb_110822_020 Hb_110822_020 Hb_002874_080--Hb_110822_020 Hb_002081_250 Hb_002081_250 Hb_002874_080--Hb_002081_250 Hb_170761_010 Hb_170761_010 Hb_002874_080--Hb_170761_010 Hb_000286_250 Hb_000286_250 Hb_002874_080--Hb_000286_250 Hb_002200_010 Hb_002200_010 Hb_002874_080--Hb_002200_010 Hb_000057_030 Hb_000057_030 Hb_002874_080--Hb_000057_030 Hb_110822_020--Hb_002081_250 Hb_110822_020--Hb_170761_010 Hb_110822_020--Hb_000286_250 Hb_110822_020--Hb_002200_010 Hb_110822_020--Hb_000057_030 Hb_021931_030 Hb_021931_030 Hb_110822_020--Hb_021931_030 Hb_002081_250--Hb_170761_010 Hb_002081_250--Hb_000286_250 Hb_002081_250--Hb_002200_010 Hb_002081_250--Hb_000057_030 Hb_002081_250--Hb_021931_030 Hb_170761_010--Hb_000286_250 Hb_170761_010--Hb_002200_010 Hb_170761_010--Hb_000057_030 Hb_170761_010--Hb_021931_030 Hb_000286_250--Hb_002200_010 Hb_000286_250--Hb_000057_030 Hb_000286_250--Hb_021931_030 Hb_002200_010--Hb_000057_030 Hb_011495_020 Hb_011495_020 Hb_002200_010--Hb_011495_020 Hb_000057_030--Hb_011495_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.722675 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0329306 0 2.60004 0

CAGE analysis