Hb_002917_020

Information

Type -
Description -
Location Contig2917: 47518-48096
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_662449
description hypothetical protein
nr
ID XP_002872187.1
description predicted protein [Arabidopsis lyrata subsp. lyrata]
swissprot
ID Q9M5J8
description Polygalacturonase inhibitor 2 OS=Arabidopsis thaliana GN=PGIP2 PE=2 SV=2
trembl
ID D7M4L7
description Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_662449 PE=4 SV=1
Gene Ontology
ID GO:0016021
description receptor-like protein kinase hsl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30582: 47976-48075
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002917_020 0.0 - - predicted protein [Arabidopsis lyrata subsp. lyrata]
2 Hb_004931_060 0.0880475773 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4 [Nelumbo nucifera]
3 Hb_186298_010 0.1036726407 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_005550_070 0.1061348065 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Populus euphratica]
5 Hb_011628_030 0.1077386516 - - conserved hypothetical protein [Ricinus communis]
6 Hb_047163_010 0.1114701034 - - PREDICTED: periaxin-like [Populus euphratica]
7 Hb_001951_090 0.1154660009 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
8 Hb_002917_030 0.1186104678 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Setaria italica]
9 Hb_000917_150 0.1192556016 - - conserved hypothetical protein [Ricinus communis]
10 Hb_059162_010 0.1288715264 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_001952_110 0.1289379824 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
12 Hb_004109_300 0.1299882125 - - hypothetical protein POPTR_0003s21800g [Populus trichocarpa]
13 Hb_125876_010 0.1347518575 - - unnamed protein product [Vitis vinifera]
14 Hb_001596_040 0.1351823159 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
15 Hb_000185_060 0.136066662 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
16 Hb_000300_570 0.136191213 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
17 Hb_001863_460 0.1372943881 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
18 Hb_003677_010 0.1400690173 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
19 Hb_012053_030 0.1417858036 - - PREDICTED: GDSL esterase/lipase At5g22810 [Jatropha curcas]
20 Hb_008020_010 0.1428768541 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Jatropha curcas]

Gene co-expression network

sample Hb_002917_020 Hb_002917_020 Hb_004931_060 Hb_004931_060 Hb_002917_020--Hb_004931_060 Hb_186298_010 Hb_186298_010 Hb_002917_020--Hb_186298_010 Hb_005550_070 Hb_005550_070 Hb_002917_020--Hb_005550_070 Hb_011628_030 Hb_011628_030 Hb_002917_020--Hb_011628_030 Hb_047163_010 Hb_047163_010 Hb_002917_020--Hb_047163_010 Hb_001951_090 Hb_001951_090 Hb_002917_020--Hb_001951_090 Hb_004931_060--Hb_011628_030 Hb_004931_060--Hb_047163_010 Hb_004931_060--Hb_186298_010 Hb_004931_060--Hb_005550_070 Hb_059162_010 Hb_059162_010 Hb_004931_060--Hb_059162_010 Hb_126077_020 Hb_126077_020 Hb_186298_010--Hb_126077_020 Hb_000265_010 Hb_000265_010 Hb_186298_010--Hb_000265_010 Hb_002716_080 Hb_002716_080 Hb_186298_010--Hb_002716_080 Hb_001863_460 Hb_001863_460 Hb_186298_010--Hb_001863_460 Hb_005846_010 Hb_005846_010 Hb_005550_070--Hb_005846_010 Hb_005550_070--Hb_011628_030 Hb_125876_010 Hb_125876_010 Hb_005550_070--Hb_125876_010 Hb_005550_070--Hb_047163_010 Hb_004109_300 Hb_004109_300 Hb_005550_070--Hb_004109_300 Hb_156949_010 Hb_156949_010 Hb_005550_070--Hb_156949_010 Hb_011628_030--Hb_047163_010 Hb_011628_030--Hb_059162_010 Hb_011628_030--Hb_125876_010 Hb_002743_030 Hb_002743_030 Hb_011628_030--Hb_002743_030 Hb_047163_010--Hb_059162_010 Hb_047163_010--Hb_125876_010 Hb_047163_010--Hb_002743_030 Hb_047163_010--Hb_004109_300 Hb_001952_110 Hb_001952_110 Hb_001951_090--Hb_001952_110 Hb_008020_010 Hb_008020_010 Hb_001951_090--Hb_008020_010 Hb_000917_150 Hb_000917_150 Hb_001951_090--Hb_000917_150 Hb_002917_030 Hb_002917_030 Hb_001951_090--Hb_002917_030 Hb_012019_020 Hb_012019_020 Hb_001951_090--Hb_012019_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0916254 10.3172 0.828379 1.06853 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.106522 0.0837104 0.145614 17.3747 0

CAGE analysis