Hb_126077_020

Information

Type -
Description -
Location Contig126077: 37-1530
Sequence    

Annotation

kegg
ID tcc:TCM_045018
description Kinase family protein with leucine-rich repeat domain
nr
ID XP_007010902.1
description Kinase family protein with leucine-rich repeat domain [Theobroma cacao]
swissprot
ID Q9LP24
description Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1
trembl
ID A0A061FSS6
description Kinase family protein with leucine-rich repeat domain OS=Theobroma cacao GN=TCM_045018 PE=4 SV=1
Gene Ontology
ID GO:0016740
description leucine-rich repeat receptor-like protein kinase family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_126077_020 0.0 - - Kinase family protein with leucine-rich repeat domain [Theobroma cacao]
2 Hb_034342_010 0.0681503498 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003556_060 0.0737141308 - - -
4 Hb_022998_010 0.0739706554 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_001424_080 0.0788148574 - - PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 [Jatropha curcas]
6 Hb_001663_100 0.0971153919 - - -
7 Hb_186298_010 0.0985128884 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_002716_080 0.107925157 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
9 Hb_002003_020 0.1134247645 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
10 Hb_017866_020 0.1268908021 transcription factor TF Family: WRKY WRKY transcription factor 40 [Jatropha curcas]
11 Hb_001863_460 0.1300926263 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
12 Hb_000649_030 0.1307497324 - - scab resistance family protein [Populus trichocarpa]
13 Hb_001953_130 0.131177265 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]
14 Hb_000265_010 0.1366979922 - - amino acid transporter, putative [Ricinus communis]
15 Hb_002400_250 0.1386067295 - - amino acid binding protein, putative [Ricinus communis]
16 Hb_004136_050 0.1430909481 - - -
17 Hb_000692_180 0.1438739725 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
18 Hb_001283_010 0.1468663397 transcription factor TF Family: LOB LOB domain-containing protein 15 [Populus tremula x Populus tremuloides]
19 Hb_019229_020 0.1478855898 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
20 Hb_001157_150 0.1480312615 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]

Gene co-expression network

sample Hb_126077_020 Hb_126077_020 Hb_034342_010 Hb_034342_010 Hb_126077_020--Hb_034342_010 Hb_003556_060 Hb_003556_060 Hb_126077_020--Hb_003556_060 Hb_022998_010 Hb_022998_010 Hb_126077_020--Hb_022998_010 Hb_001424_080 Hb_001424_080 Hb_126077_020--Hb_001424_080 Hb_001663_100 Hb_001663_100 Hb_126077_020--Hb_001663_100 Hb_186298_010 Hb_186298_010 Hb_126077_020--Hb_186298_010 Hb_034342_010--Hb_001424_080 Hb_034342_010--Hb_003556_060 Hb_034342_010--Hb_001663_100 Hb_034342_010--Hb_022998_010 Hb_000692_180 Hb_000692_180 Hb_034342_010--Hb_000692_180 Hb_003556_060--Hb_022998_010 Hb_003556_060--Hb_001424_080 Hb_017866_020 Hb_017866_020 Hb_003556_060--Hb_017866_020 Hb_000077_460 Hb_000077_460 Hb_003556_060--Hb_000077_460 Hb_022998_010--Hb_001663_100 Hb_007432_050 Hb_007432_050 Hb_022998_010--Hb_007432_050 Hb_000649_030 Hb_000649_030 Hb_022998_010--Hb_000649_030 Hb_001424_080--Hb_001663_100 Hb_001424_080--Hb_000692_180 Hb_002400_250 Hb_002400_250 Hb_001424_080--Hb_002400_250 Hb_001663_100--Hb_000692_180 Hb_000462_020 Hb_000462_020 Hb_001663_100--Hb_000462_020 Hb_004931_060 Hb_004931_060 Hb_186298_010--Hb_004931_060 Hb_002917_020 Hb_002917_020 Hb_186298_010--Hb_002917_020 Hb_000265_010 Hb_000265_010 Hb_186298_010--Hb_000265_010 Hb_002716_080 Hb_002716_080 Hb_186298_010--Hb_002716_080 Hb_001863_460 Hb_001863_460 Hb_186298_010--Hb_001863_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0851446 0.0112381 0.0224193 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0973283 0

CAGE analysis