Hb_002400_250

Information

Type -
Description -
Location Contig2400: 207461-209542
Sequence    

Annotation

kegg
ID rcu:RCOM_0923450
description amino acid binding protein, putative
nr
ID XP_002515490.1
description amino acid binding protein, putative [Ricinus communis]
swissprot
ID F4JWR0
description ACT domain-containing protein ACR2 OS=Arabidopsis thaliana GN=ACR2 PE=3 SV=1
trembl
ID B9RP21
description Amino acid binding protein, putative OS=Ricinus communis GN=RCOM_0923450 PE=4 SV=1
Gene Ontology
ID GO:0003824
description act domain-containing protein acr2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_250 0.0 - - amino acid binding protein, putative [Ricinus communis]
2 Hb_000462_020 0.1032481739 - - UDP-glucosyltransferase, putative [Ricinus communis]
3 Hb_015912_010 0.1078594218 - - cytochrome P450, putative [Ricinus communis]
4 Hb_001424_080 0.1113331016 - - PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 [Jatropha curcas]
5 Hb_001663_100 0.1207839208 - - -
6 Hb_004931_060 0.1215527659 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4 [Nelumbo nucifera]
7 Hb_186298_010 0.1281029544 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_002917_030 0.1288780007 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Setaria italica]
9 Hb_012053_030 0.1325849335 - - PREDICTED: GDSL esterase/lipase At5g22810 [Jatropha curcas]
10 Hb_001596_040 0.1355395884 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
11 Hb_012702_020 0.1383931225 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
12 Hb_126077_020 0.1386067295 - - Kinase family protein with leucine-rich repeat domain [Theobroma cacao]
13 Hb_034342_010 0.1400218486 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000101_060 0.1414986997 - - -
15 Hb_157122_010 0.1438713419 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
16 Hb_003085_050 0.1450210959 - - Polygalacturonase non-catalytic subunit AroGP3 precursor, putative [Ricinus communis]
17 Hb_000322_200 0.1455133595 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]
18 Hb_002553_080 0.147191952 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF096-like [Eucalyptus grandis]
19 Hb_001953_130 0.1492433116 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]
20 Hb_000692_180 0.1512440639 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]

Gene co-expression network

sample Hb_002400_250 Hb_002400_250 Hb_000462_020 Hb_000462_020 Hb_002400_250--Hb_000462_020 Hb_015912_010 Hb_015912_010 Hb_002400_250--Hb_015912_010 Hb_001424_080 Hb_001424_080 Hb_002400_250--Hb_001424_080 Hb_001663_100 Hb_001663_100 Hb_002400_250--Hb_001663_100 Hb_004931_060 Hb_004931_060 Hb_002400_250--Hb_004931_060 Hb_186298_010 Hb_186298_010 Hb_002400_250--Hb_186298_010 Hb_000462_020--Hb_001663_100 Hb_002374_110 Hb_002374_110 Hb_000462_020--Hb_002374_110 Hb_000692_180 Hb_000692_180 Hb_000462_020--Hb_000692_180 Hb_000462_020--Hb_004931_060 Hb_001596_040 Hb_001596_040 Hb_000462_020--Hb_001596_040 Hb_012702_020 Hb_012702_020 Hb_015912_010--Hb_012702_020 Hb_000101_060 Hb_000101_060 Hb_015912_010--Hb_000101_060 Hb_003752_130 Hb_003752_130 Hb_015912_010--Hb_003752_130 Hb_166257_010 Hb_166257_010 Hb_015912_010--Hb_166257_010 Hb_000035_300 Hb_000035_300 Hb_015912_010--Hb_000035_300 Hb_034342_010 Hb_034342_010 Hb_001424_080--Hb_034342_010 Hb_001424_080--Hb_001663_100 Hb_126077_020 Hb_126077_020 Hb_001424_080--Hb_126077_020 Hb_001424_080--Hb_000692_180 Hb_003556_060 Hb_003556_060 Hb_001424_080--Hb_003556_060 Hb_001663_100--Hb_000692_180 Hb_001663_100--Hb_034342_010 Hb_022998_010 Hb_022998_010 Hb_001663_100--Hb_022998_010 Hb_001663_100--Hb_126077_020 Hb_011628_030 Hb_011628_030 Hb_004931_060--Hb_011628_030 Hb_047163_010 Hb_047163_010 Hb_004931_060--Hb_047163_010 Hb_004931_060--Hb_186298_010 Hb_002917_020 Hb_002917_020 Hb_004931_060--Hb_002917_020 Hb_005550_070 Hb_005550_070 Hb_004931_060--Hb_005550_070 Hb_059162_010 Hb_059162_010 Hb_004931_060--Hb_059162_010 Hb_186298_010--Hb_126077_020 Hb_186298_010--Hb_002917_020 Hb_000265_010 Hb_000265_010 Hb_186298_010--Hb_000265_010 Hb_002716_080 Hb_002716_080 Hb_186298_010--Hb_002716_080 Hb_001863_460 Hb_001863_460 Hb_186298_010--Hb_001863_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.16234 0.032866 0.0113398 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.182913 0

CAGE analysis