Hb_000101_060

Information

Type -
Description -
Location Contig101: 106592-107686
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0016787
description metalloendoproteinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000101_060 0.0 - - -
2 Hb_012702_020 0.0492966636 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
3 Hb_015912_010 0.0704331284 - - cytochrome P450, putative [Ricinus communis]
4 Hb_166257_010 0.1009502334 - - hypothetical protein JCGZ_21808 [Jatropha curcas]
5 Hb_003752_130 0.1104410477 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
6 Hb_009297_010 0.126896876 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
7 Hb_002553_080 0.1341222043 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF096-like [Eucalyptus grandis]
8 Hb_002400_250 0.1414986997 - - amino acid binding protein, putative [Ricinus communis]
9 Hb_008062_020 0.1457187799 - - PREDICTED: periaxin-like [Populus euphratica]
10 Hb_157122_010 0.1506766936 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
11 Hb_003085_050 0.1519586876 - - Polygalacturonase non-catalytic subunit AroGP3 precursor, putative [Ricinus communis]
12 Hb_006106_020 0.1542467323 - - ring finger protein, putative [Ricinus communis]
13 Hb_003117_060 0.1565235125 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
14 Hb_002157_180 0.1570878732 - - separase, putative [Ricinus communis]
15 Hb_000291_020 0.1573034247 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
16 Hb_008111_020 0.1627823754 - - Receptor like protein 6, putative [Theobroma cacao]
17 Hb_007666_040 0.1638110187 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic-like [Jatropha curcas]
18 Hb_000116_390 0.1668212696 - - Mlo protein [Hevea brasiliensis]
19 Hb_008616_020 0.1682782884 - - unnamed protein product [Vitis vinifera]
20 Hb_124207_010 0.171878022 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000101_060 Hb_000101_060 Hb_012702_020 Hb_012702_020 Hb_000101_060--Hb_012702_020 Hb_015912_010 Hb_015912_010 Hb_000101_060--Hb_015912_010 Hb_166257_010 Hb_166257_010 Hb_000101_060--Hb_166257_010 Hb_003752_130 Hb_003752_130 Hb_000101_060--Hb_003752_130 Hb_009297_010 Hb_009297_010 Hb_000101_060--Hb_009297_010 Hb_002553_080 Hb_002553_080 Hb_000101_060--Hb_002553_080 Hb_012702_020--Hb_015912_010 Hb_012702_020--Hb_003752_130 Hb_008111_020 Hb_008111_020 Hb_012702_020--Hb_008111_020 Hb_002157_180 Hb_002157_180 Hb_012702_020--Hb_002157_180 Hb_012702_020--Hb_166257_010 Hb_015912_010--Hb_003752_130 Hb_002400_250 Hb_002400_250 Hb_015912_010--Hb_002400_250 Hb_015912_010--Hb_166257_010 Hb_000035_300 Hb_000035_300 Hb_015912_010--Hb_000035_300 Hb_166257_010--Hb_009297_010 Hb_124207_010 Hb_124207_010 Hb_166257_010--Hb_124207_010 Hb_012553_010 Hb_012553_010 Hb_166257_010--Hb_012553_010 Hb_000291_020 Hb_000291_020 Hb_166257_010--Hb_000291_020 Hb_001268_070 Hb_001268_070 Hb_166257_010--Hb_001268_070 Hb_003752_130--Hb_008111_020 Hb_003752_130--Hb_002157_180 Hb_003752_130--Hb_000291_020 Hb_008062_020 Hb_008062_020 Hb_009297_010--Hb_008062_020 Hb_049562_010 Hb_049562_010 Hb_009297_010--Hb_049562_010 Hb_000238_010 Hb_000238_010 Hb_009297_010--Hb_000238_010 Hb_002154_090 Hb_002154_090 Hb_009297_010--Hb_002154_090 Hb_154646_010 Hb_154646_010 Hb_009297_010--Hb_154646_010 Hb_003085_050 Hb_003085_050 Hb_002553_080--Hb_003085_050 Hb_157122_010 Hb_157122_010 Hb_002553_080--Hb_157122_010 Hb_002766_040 Hb_002766_040 Hb_002553_080--Hb_002766_040 Hb_007735_010 Hb_007735_010 Hb_002553_080--Hb_007735_010 Hb_001168_080 Hb_001168_080 Hb_002553_080--Hb_001168_080 Hb_005550_070 Hb_005550_070 Hb_002553_080--Hb_005550_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.492022 0.0688469 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.393574 0

CAGE analysis