Hb_049562_010

Information

Type -
Description -
Location Contig49562: 96-942
Sequence    

Annotation

kegg
ID pop:POPTR_0121s002501
description hypothetical protein
nr
ID KDP24706.1
description hypothetical protein JCGZ_25442 [Jatropha curcas]
swissprot
ID B9RI00
description Probable terpene synthase 6 OS=Ricinus communis GN=TPS6 PE=3 SV=1
trembl
ID A0A067JL68
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25442 PE=4 SV=1
Gene Ontology
ID GO:0000287
description probable terpene synthase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_049562_010 0.0 - - hypothetical protein JCGZ_25442 [Jatropha curcas]
2 Hb_005649_120 0.0261311569 - - Anthocyanin 5-aromatic acyltransferase, putative [Ricinus communis]
3 Hb_175426_010 0.0487839075 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
4 Hb_001080_040 0.0512748767 - - cytochrome P450, putative [Ricinus communis]
5 Hb_002154_090 0.0541896394 - - -
6 Hb_000238_010 0.0550713575 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_007627_020 0.0582778208 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_030602_030 0.0583029661 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_005673_010 0.0583748775 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_068533_010 0.0587267426 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_004458_020 0.058773144 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
12 Hb_005211_200 0.058835553 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
13 Hb_007187_020 0.0589208497 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
14 Hb_000696_280 0.0590664085 - - protein phosphatase-2c, putative [Ricinus communis]
15 Hb_005181_100 0.0596672749 - - hypothetical protein POPTR_0010s15550g [Populus trichocarpa]
16 Hb_000000_350 0.0599018796 - - -
17 Hb_000107_010 0.0599312334 - - -
18 Hb_037949_010 0.0601826517 - - hypothetical protein JCGZ_11175 [Jatropha curcas]
19 Hb_000984_090 0.0602812437 - - -
20 Hb_002400_130 0.0605923199 - - PREDICTED: uncharacterized protein LOC105637626 [Jatropha curcas]

Gene co-expression network

sample Hb_049562_010 Hb_049562_010 Hb_005649_120 Hb_005649_120 Hb_049562_010--Hb_005649_120 Hb_175426_010 Hb_175426_010 Hb_049562_010--Hb_175426_010 Hb_001080_040 Hb_001080_040 Hb_049562_010--Hb_001080_040 Hb_002154_090 Hb_002154_090 Hb_049562_010--Hb_002154_090 Hb_000238_010 Hb_000238_010 Hb_049562_010--Hb_000238_010 Hb_007627_020 Hb_007627_020 Hb_049562_010--Hb_007627_020 Hb_005649_120--Hb_007627_020 Hb_030602_030 Hb_030602_030 Hb_005649_120--Hb_030602_030 Hb_005673_010 Hb_005673_010 Hb_005649_120--Hb_005673_010 Hb_068533_010 Hb_068533_010 Hb_005649_120--Hb_068533_010 Hb_004458_020 Hb_004458_020 Hb_005649_120--Hb_004458_020 Hb_175426_010--Hb_002154_090 Hb_175426_010--Hb_000238_010 Hb_175426_010--Hb_007627_020 Hb_175426_010--Hb_030602_030 Hb_175426_010--Hb_005673_010 Hb_175426_010--Hb_068533_010 Hb_039814_010 Hb_039814_010 Hb_001080_040--Hb_039814_010 Hb_154646_010 Hb_154646_010 Hb_001080_040--Hb_154646_010 Hb_001817_070 Hb_001817_070 Hb_001080_040--Hb_001817_070 Hb_000135_040 Hb_000135_040 Hb_001080_040--Hb_000135_040 Hb_008953_020 Hb_008953_020 Hb_001080_040--Hb_008953_020 Hb_002154_090--Hb_000238_010 Hb_002154_090--Hb_154646_010 Hb_002154_090--Hb_001817_070 Hb_002154_090--Hb_000135_040 Hb_002154_090--Hb_008953_020 Hb_000238_010--Hb_154646_010 Hb_000238_010--Hb_001817_070 Hb_000238_010--Hb_000135_040 Hb_000238_010--Hb_008953_020 Hb_007627_020--Hb_030602_030 Hb_007627_020--Hb_005673_010 Hb_007627_020--Hb_068533_010 Hb_007627_020--Hb_004458_020 Hb_005211_200 Hb_005211_200 Hb_007627_020--Hb_005211_200 Hb_007187_020 Hb_007187_020 Hb_007627_020--Hb_007187_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 35.6117 0.0885493 0.185706 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 21.8364 0

CAGE analysis