Hb_000238_010

Information

Type -
Description -
Location Contig238: 52043-58018
Sequence    

Annotation

kegg
ID rcu:RCOM_1494410
description serine-threonine protein kinase, plant-type, putative (EC:2.7.10.2)
nr
ID XP_002516047.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9LV48
description Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=2 SV=1
trembl
ID B9RQM8
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494410 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000238_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_002154_090 0.0019627432 - - -
3 Hb_154646_010 0.0174507243 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
4 Hb_001817_070 0.0203517324 - - nucleic acid binding protein, putative [Ricinus communis]
5 Hb_175426_010 0.0252031095 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
6 Hb_000135_040 0.0279836223 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
7 Hb_008953_020 0.0281755941 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
8 Hb_008221_010 0.0330948859 - - hypothetical protein JCGZ_10961 [Jatropha curcas]
9 Hb_013654_020 0.0367295362 - - putative prolin-rich extensin-like receptor protein kinase family protein [Zea mays]
10 Hb_048653_010 0.03687173 - - PREDICTED: mavicyanin [Jatropha curcas]
11 Hb_042239_010 0.0381336372 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
12 Hb_000370_050 0.042408845 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
13 Hb_003702_020 0.04244435 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
14 Hb_008092_010 0.0428878681 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
15 Hb_007592_010 0.0450326349 - - PREDICTED: uncharacterized protein LOC105118874 [Populus euphratica]
16 Hb_005426_010 0.0451866848 - - polyprotein [Oryza australiensis]
17 Hb_049562_010 0.0550713575 - - hypothetical protein JCGZ_25442 [Jatropha curcas]
18 Hb_002342_040 0.0555611711 - - FERONIA, partial [Arabis alpina]
19 Hb_007627_020 0.0574906836 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_030602_030 0.0575366364 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000238_010 Hb_000238_010 Hb_002154_090 Hb_002154_090 Hb_000238_010--Hb_002154_090 Hb_154646_010 Hb_154646_010 Hb_000238_010--Hb_154646_010 Hb_001817_070 Hb_001817_070 Hb_000238_010--Hb_001817_070 Hb_175426_010 Hb_175426_010 Hb_000238_010--Hb_175426_010 Hb_000135_040 Hb_000135_040 Hb_000238_010--Hb_000135_040 Hb_008953_020 Hb_008953_020 Hb_000238_010--Hb_008953_020 Hb_002154_090--Hb_154646_010 Hb_002154_090--Hb_001817_070 Hb_002154_090--Hb_175426_010 Hb_002154_090--Hb_000135_040 Hb_002154_090--Hb_008953_020 Hb_154646_010--Hb_001817_070 Hb_154646_010--Hb_000135_040 Hb_154646_010--Hb_008953_020 Hb_008221_010 Hb_008221_010 Hb_154646_010--Hb_008221_010 Hb_013654_020 Hb_013654_020 Hb_154646_010--Hb_013654_020 Hb_001817_070--Hb_000135_040 Hb_001817_070--Hb_008953_020 Hb_001817_070--Hb_008221_010 Hb_001817_070--Hb_013654_020 Hb_048653_010 Hb_048653_010 Hb_001817_070--Hb_048653_010 Hb_007627_020 Hb_007627_020 Hb_175426_010--Hb_007627_020 Hb_030602_030 Hb_030602_030 Hb_175426_010--Hb_030602_030 Hb_005673_010 Hb_005673_010 Hb_175426_010--Hb_005673_010 Hb_068533_010 Hb_068533_010 Hb_175426_010--Hb_068533_010 Hb_000135_040--Hb_008953_020 Hb_000135_040--Hb_008221_010 Hb_000135_040--Hb_013654_020 Hb_000135_040--Hb_048653_010 Hb_042239_010 Hb_042239_010 Hb_000135_040--Hb_042239_010 Hb_008953_020--Hb_008221_010 Hb_008953_020--Hb_013654_020 Hb_008953_020--Hb_048653_010 Hb_008953_020--Hb_042239_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.162489 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0879148 0

CAGE analysis