Hb_175426_010

Information

Type -
Description -
Location Contig175426: 34-1053
Sequence    

Annotation

kegg
ID pop:POPTR_0011s14430g
description POPTRDRAFT_888988; hypothetical protein
nr
ID XP_012071398.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
swissprot
ID Q9SD62
description Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1
trembl
ID A0A067L2Y9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05022 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_175426_010 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
2 Hb_002154_090 0.0232408311 - - -
3 Hb_000238_010 0.0252031095 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_007627_020 0.0323056979 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_030602_030 0.0323516904 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_005673_010 0.0324829672 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_068533_010 0.033120002 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_004458_020 0.033203369 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
9 Hb_005211_200 0.0333152665 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
10 Hb_007187_020 0.0334677796 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
11 Hb_000696_280 0.0337269375 - - protein phosphatase-2c, putative [Ricinus communis]
12 Hb_005181_100 0.0347826126 - - hypothetical protein POPTR_0010s15550g [Populus trichocarpa]
13 Hb_000000_350 0.0351889259 - - -
14 Hb_000107_010 0.0352395421 - - -
15 Hb_037949_010 0.0356711025 - - hypothetical protein JCGZ_11175 [Jatropha curcas]
16 Hb_000984_090 0.0358393901 - - -
17 Hb_002400_130 0.0363669845 - - PREDICTED: uncharacterized protein LOC105637626 [Jatropha curcas]
18 Hb_005144_200 0.0370278908 - - PREDICTED: uncharacterized protein LOC105642066 [Jatropha curcas]
19 Hb_113631_010 0.037504149 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
20 Hb_000029_250 0.0380190663 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_175426_010 Hb_175426_010 Hb_002154_090 Hb_002154_090 Hb_175426_010--Hb_002154_090 Hb_000238_010 Hb_000238_010 Hb_175426_010--Hb_000238_010 Hb_007627_020 Hb_007627_020 Hb_175426_010--Hb_007627_020 Hb_030602_030 Hb_030602_030 Hb_175426_010--Hb_030602_030 Hb_005673_010 Hb_005673_010 Hb_175426_010--Hb_005673_010 Hb_068533_010 Hb_068533_010 Hb_175426_010--Hb_068533_010 Hb_002154_090--Hb_000238_010 Hb_154646_010 Hb_154646_010 Hb_002154_090--Hb_154646_010 Hb_001817_070 Hb_001817_070 Hb_002154_090--Hb_001817_070 Hb_000135_040 Hb_000135_040 Hb_002154_090--Hb_000135_040 Hb_008953_020 Hb_008953_020 Hb_002154_090--Hb_008953_020 Hb_000238_010--Hb_154646_010 Hb_000238_010--Hb_001817_070 Hb_000238_010--Hb_000135_040 Hb_000238_010--Hb_008953_020 Hb_007627_020--Hb_030602_030 Hb_007627_020--Hb_005673_010 Hb_007627_020--Hb_068533_010 Hb_004458_020 Hb_004458_020 Hb_007627_020--Hb_004458_020 Hb_005211_200 Hb_005211_200 Hb_007627_020--Hb_005211_200 Hb_007187_020 Hb_007187_020 Hb_007627_020--Hb_007187_020 Hb_030602_030--Hb_005673_010 Hb_030602_030--Hb_068533_010 Hb_030602_030--Hb_004458_020 Hb_030602_030--Hb_005211_200 Hb_030602_030--Hb_007187_020 Hb_005673_010--Hb_068533_010 Hb_005673_010--Hb_004458_020 Hb_005673_010--Hb_005211_200 Hb_005673_010--Hb_007187_020 Hb_068533_010--Hb_004458_020 Hb_068533_010--Hb_005211_200 Hb_068533_010--Hb_007187_020 Hb_000696_280 Hb_000696_280 Hb_068533_010--Hb_000696_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.30648 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.187578 0

CAGE analysis