Hb_002154_090

Information

Type -
Description -
Location Contig2154: 78224-78436
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002154_090 0.0 - - -
2 Hb_000238_010 0.0019627432 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_154646_010 0.0194131883 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
4 Hb_001817_070 0.0223141003 - - nucleic acid binding protein, putative [Ricinus communis]
5 Hb_175426_010 0.0232408311 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
6 Hb_000135_040 0.0299456679 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
7 Hb_008953_020 0.0301376303 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
8 Hb_008221_010 0.0350566585 - - hypothetical protein JCGZ_10961 [Jatropha curcas]
9 Hb_013654_020 0.0386910863 - - putative prolin-rich extensin-like receptor protein kinase family protein [Zea mays]
10 Hb_048653_010 0.038833271 - - PREDICTED: mavicyanin [Jatropha curcas]
11 Hb_042239_010 0.040095095 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
12 Hb_000370_050 0.0443699997 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
13 Hb_003702_020 0.044405502 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
14 Hb_008092_010 0.0448489867 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
15 Hb_007592_010 0.0469935869 - - PREDICTED: uncharacterized protein LOC105118874 [Populus euphratica]
16 Hb_005426_010 0.0471476246 - - polyprotein [Oryza australiensis]
17 Hb_049562_010 0.0541896394 - - hypothetical protein JCGZ_25442 [Jatropha curcas]
18 Hb_007627_020 0.055530409 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_030602_030 0.0555763657 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_005673_010 0.0557075402 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_002154_090 Hb_002154_090 Hb_000238_010 Hb_000238_010 Hb_002154_090--Hb_000238_010 Hb_154646_010 Hb_154646_010 Hb_002154_090--Hb_154646_010 Hb_001817_070 Hb_001817_070 Hb_002154_090--Hb_001817_070 Hb_175426_010 Hb_175426_010 Hb_002154_090--Hb_175426_010 Hb_000135_040 Hb_000135_040 Hb_002154_090--Hb_000135_040 Hb_008953_020 Hb_008953_020 Hb_002154_090--Hb_008953_020 Hb_000238_010--Hb_154646_010 Hb_000238_010--Hb_001817_070 Hb_000238_010--Hb_175426_010 Hb_000238_010--Hb_000135_040 Hb_000238_010--Hb_008953_020 Hb_154646_010--Hb_001817_070 Hb_154646_010--Hb_000135_040 Hb_154646_010--Hb_008953_020 Hb_008221_010 Hb_008221_010 Hb_154646_010--Hb_008221_010 Hb_013654_020 Hb_013654_020 Hb_154646_010--Hb_013654_020 Hb_001817_070--Hb_000135_040 Hb_001817_070--Hb_008953_020 Hb_001817_070--Hb_008221_010 Hb_001817_070--Hb_013654_020 Hb_048653_010 Hb_048653_010 Hb_001817_070--Hb_048653_010 Hb_007627_020 Hb_007627_020 Hb_175426_010--Hb_007627_020 Hb_030602_030 Hb_030602_030 Hb_175426_010--Hb_030602_030 Hb_005673_010 Hb_005673_010 Hb_175426_010--Hb_005673_010 Hb_068533_010 Hb_068533_010 Hb_175426_010--Hb_068533_010 Hb_000135_040--Hb_008953_020 Hb_000135_040--Hb_008221_010 Hb_000135_040--Hb_013654_020 Hb_000135_040--Hb_048653_010 Hb_042239_010 Hb_042239_010 Hb_000135_040--Hb_042239_010 Hb_008953_020--Hb_008221_010 Hb_008953_020--Hb_013654_020 Hb_008953_020--Hb_048653_010 Hb_008953_020--Hb_042239_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.767584 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.41934 0

CAGE analysis