Hb_008062_020

Information

Type -
Description -
Location Contig8062: 3522-3866
Sequence    

Annotation

kegg
ID rcu:RCOM_0885390
description hypothetical protein
nr
ID XP_011023100.1
description PREDICTED: periaxin-like [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9S9I1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0885390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008062_020 0.0 - - PREDICTED: periaxin-like [Populus euphratica]
2 Hb_005649_120 0.0609828156 - - Anthocyanin 5-aromatic acyltransferase, putative [Ricinus communis]
3 Hb_007627_020 0.0681691536 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_030602_030 0.0681700803 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_005673_010 0.0681728956 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_068533_010 0.0681901304 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_004458_020 0.0681928243 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
8 Hb_005211_200 0.0681965994 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
9 Hb_007187_020 0.0682020391 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
10 Hb_000696_280 0.0682120604 - - protein phosphatase-2c, putative [Ricinus communis]
11 Hb_005181_100 0.0682629966 - - hypothetical protein POPTR_0010s15550g [Populus trichocarpa]
12 Hb_000000_350 0.0682869246 - - -
13 Hb_000107_010 0.0682900735 - - -
14 Hb_037949_010 0.0683184333 - - hypothetical protein JCGZ_11175 [Jatropha curcas]
15 Hb_000984_090 0.068330225 - - -
16 Hb_002400_130 0.0683698551 - - PREDICTED: uncharacterized protein LOC105637626 [Jatropha curcas]
17 Hb_005144_200 0.068425186 - - PREDICTED: uncharacterized protein LOC105642066 [Jatropha curcas]
18 Hb_113631_010 0.0684689715 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_000029_250 0.068519991 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000352_250 0.0685642207 - - -

Gene co-expression network

sample Hb_008062_020 Hb_008062_020 Hb_005649_120 Hb_005649_120 Hb_008062_020--Hb_005649_120 Hb_007627_020 Hb_007627_020 Hb_008062_020--Hb_007627_020 Hb_030602_030 Hb_030602_030 Hb_008062_020--Hb_030602_030 Hb_005673_010 Hb_005673_010 Hb_008062_020--Hb_005673_010 Hb_068533_010 Hb_068533_010 Hb_008062_020--Hb_068533_010 Hb_004458_020 Hb_004458_020 Hb_008062_020--Hb_004458_020 Hb_049562_010 Hb_049562_010 Hb_005649_120--Hb_049562_010 Hb_005649_120--Hb_007627_020 Hb_005649_120--Hb_030602_030 Hb_005649_120--Hb_005673_010 Hb_005649_120--Hb_068533_010 Hb_005649_120--Hb_004458_020 Hb_007627_020--Hb_030602_030 Hb_007627_020--Hb_005673_010 Hb_007627_020--Hb_068533_010 Hb_007627_020--Hb_004458_020 Hb_005211_200 Hb_005211_200 Hb_007627_020--Hb_005211_200 Hb_007187_020 Hb_007187_020 Hb_007627_020--Hb_007187_020 Hb_030602_030--Hb_005673_010 Hb_030602_030--Hb_068533_010 Hb_030602_030--Hb_004458_020 Hb_030602_030--Hb_005211_200 Hb_030602_030--Hb_007187_020 Hb_005673_010--Hb_068533_010 Hb_005673_010--Hb_004458_020 Hb_005673_010--Hb_005211_200 Hb_005673_010--Hb_007187_020 Hb_068533_010--Hb_004458_020 Hb_068533_010--Hb_005211_200 Hb_068533_010--Hb_007187_020 Hb_000696_280 Hb_000696_280 Hb_068533_010--Hb_000696_280 Hb_004458_020--Hb_005211_200 Hb_004458_020--Hb_007187_020 Hb_004458_020--Hb_000696_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 12.3692 0.19772 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 8.78666 0

CAGE analysis