Hb_007735_010

Information

Type -
Description -
Location Contig7735: 3928-5065
Sequence    

Annotation

kegg
ID rcu:RCOM_0901980
description Gibberellin 20 oxidase, putative (EC:1.14.11.15)
nr
ID XP_002517690.1
description Gibberellin 20 oxidase, putative [Ricinus communis]
swissprot
ID Q9ZTA3
description Probable 2-oxoglutarate-dependent dioxygenase AOP1 OS=Arabidopsis thaliana GN=AOP1 PE=2 SV=1
trembl
ID B9RVC1
description Gibberellin 20 oxidase, putative OS=Ricinus communis GN=RCOM_0901980 PE=3 SV=1
Gene Ontology
ID GO:0016707
description gibberellin 20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007735_010 0.0 - - Gibberellin 20 oxidase, putative [Ricinus communis]
2 Hb_002766_040 0.0277305406 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
3 Hb_183700_010 0.088853808 - - UDP-glucosyltransferase, putative [Ricinus communis]
4 Hb_031862_240 0.0889843656 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
5 Hb_002553_080 0.0944282368 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF096-like [Eucalyptus grandis]
6 Hb_011628_030 0.1101821649 - - conserved hypothetical protein [Ricinus communis]
7 Hb_014113_010 0.1145770937 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
8 Hb_003085_050 0.1168651084 - - Polygalacturonase non-catalytic subunit AroGP3 precursor, putative [Ricinus communis]
9 Hb_005846_010 0.1189378822 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
10 Hb_006478_190 0.1191977071 - - lipid binding protein, putative [Ricinus communis]
11 Hb_005550_070 0.1252950853 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Populus euphratica]
12 Hb_157122_010 0.1255477096 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
13 Hb_005731_080 0.1289034542 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
14 Hb_001168_080 0.132393616 - - kinase, putative [Ricinus communis]
15 Hb_005993_070 0.1328925902 - - lipid binding protein, putative [Ricinus communis]
16 Hb_008159_030 0.1330181704 - - hypothetical protein B456_004G088300 [Gossypium raimondii]
17 Hb_000813_120 0.1331492885 - - PREDICTED: serine carboxypeptidase-like 18 [Tarenaya hassleriana]
18 Hb_072368_010 0.1334347787 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
19 Hb_000107_460 0.133510317 - - PREDICTED: uncharacterized protein LOC104585930 [Nelumbo nucifera]
20 Hb_004693_030 0.1336676247 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]

Gene co-expression network

sample Hb_007735_010 Hb_007735_010 Hb_002766_040 Hb_002766_040 Hb_007735_010--Hb_002766_040 Hb_183700_010 Hb_183700_010 Hb_007735_010--Hb_183700_010 Hb_031862_240 Hb_031862_240 Hb_007735_010--Hb_031862_240 Hb_002553_080 Hb_002553_080 Hb_007735_010--Hb_002553_080 Hb_011628_030 Hb_011628_030 Hb_007735_010--Hb_011628_030 Hb_014113_010 Hb_014113_010 Hb_007735_010--Hb_014113_010 Hb_002766_040--Hb_002553_080 Hb_002766_040--Hb_183700_010 Hb_003085_050 Hb_003085_050 Hb_002766_040--Hb_003085_050 Hb_002766_040--Hb_014113_010 Hb_157122_010 Hb_157122_010 Hb_002766_040--Hb_157122_010 Hb_003581_240 Hb_003581_240 Hb_183700_010--Hb_003581_240 Hb_000813_120 Hb_000813_120 Hb_183700_010--Hb_000813_120 Hb_183700_010--Hb_014113_010 Hb_003010_040 Hb_003010_040 Hb_183700_010--Hb_003010_040 Hb_006478_190 Hb_006478_190 Hb_031862_240--Hb_006478_190 Hb_006124_010 Hb_006124_010 Hb_031862_240--Hb_006124_010 Hb_161981_020 Hb_161981_020 Hb_031862_240--Hb_161981_020 Hb_021931_030 Hb_021931_030 Hb_031862_240--Hb_021931_030 Hb_176138_010 Hb_176138_010 Hb_031862_240--Hb_176138_010 Hb_006810_080 Hb_006810_080 Hb_031862_240--Hb_006810_080 Hb_002553_080--Hb_003085_050 Hb_002553_080--Hb_157122_010 Hb_001168_080 Hb_001168_080 Hb_002553_080--Hb_001168_080 Hb_005550_070 Hb_005550_070 Hb_002553_080--Hb_005550_070 Hb_047163_010 Hb_047163_010 Hb_011628_030--Hb_047163_010 Hb_059162_010 Hb_059162_010 Hb_011628_030--Hb_059162_010 Hb_125876_010 Hb_125876_010 Hb_011628_030--Hb_125876_010 Hb_004931_060 Hb_004931_060 Hb_011628_030--Hb_004931_060 Hb_011628_030--Hb_005550_070 Hb_002743_030 Hb_002743_030 Hb_011628_030--Hb_002743_030 Hb_084495_010 Hb_084495_010 Hb_014113_010--Hb_084495_010 Hb_099198_010 Hb_099198_010 Hb_014113_010--Hb_099198_010 Hb_003121_020 Hb_003121_020 Hb_014113_010--Hb_003121_020 Hb_014113_010--Hb_003581_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.150951 0.0183084 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.354773 0

CAGE analysis