Hb_014113_010

Information

Type -
Description -
Location Contig14113: 1019-6832
Sequence    

Annotation

kegg
ID pop:POPTR_0005s23190g
description POPTRDRAFT_761211; hypothetical protein
nr
ID XP_012092234.1
description PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
swissprot
ID E2IHE0
description Copal-8-ol diphosphate hydratase, chloroplastic OS=Cistus creticus subsp. creticus GN=CLS PE=1 SV=1
trembl
ID A0A067JPI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21925 PE=4 SV=1
Gene Ontology
ID GO:0016829
description ent-copalyl diphosphate chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014113_010 0.0 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
2 Hb_084495_010 0.0761367453 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Eucalyptus grandis]
3 Hb_099198_010 0.0856584366 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 isoform X2 [Nicotiana tomentosiformis]
4 Hb_003121_020 0.08599066 - - secretory peroxidase PX3 [Manihot esculenta]
5 Hb_183700_010 0.0895197785 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_002766_040 0.099105707 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
7 Hb_003581_240 0.109785943 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
8 Hb_007735_010 0.1145770937 - - Gibberellin 20 oxidase, putative [Ricinus communis]
9 Hb_000640_270 0.1174603999 - - PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase 30 [Jatropha curcas]
10 Hb_003085_050 0.1206117506 - - Polygalacturonase non-catalytic subunit AroGP3 precursor, putative [Ricinus communis]
11 Hb_157122_010 0.1234917085 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
12 Hb_010839_070 0.1289168016 - - uncharacterized protein LOC100810725 [Glycine max]
13 Hb_003010_040 0.1452856448 - - hypothetical protein AALP_AA7G248200 [Arabis alpina]
14 Hb_000813_120 0.1456860949 - - PREDICTED: serine carboxypeptidase-like 18 [Tarenaya hassleriana]
15 Hb_117464_010 0.148722872 - - PREDICTED: flavone 3'-O-methyltransferase 1-like [Jatropha curcas]
16 Hb_004586_080 0.1544101602 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
17 Hb_008160_020 0.1550062564 - - PREDICTED: AT-hook motif nuclear-localized protein 23-like isoform X1 [Jatropha curcas]
18 Hb_002553_080 0.1580944211 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF096-like [Eucalyptus grandis]
19 Hb_000407_110 0.1605179861 - - ripening-induced ACC oxidase [Carica papaya]
20 Hb_006919_010 0.161035414 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Vitis vinifera]

Gene co-expression network

sample Hb_014113_010 Hb_014113_010 Hb_084495_010 Hb_084495_010 Hb_014113_010--Hb_084495_010 Hb_099198_010 Hb_099198_010 Hb_014113_010--Hb_099198_010 Hb_003121_020 Hb_003121_020 Hb_014113_010--Hb_003121_020 Hb_183700_010 Hb_183700_010 Hb_014113_010--Hb_183700_010 Hb_002766_040 Hb_002766_040 Hb_014113_010--Hb_002766_040 Hb_003581_240 Hb_003581_240 Hb_014113_010--Hb_003581_240 Hb_084495_010--Hb_099198_010 Hb_084495_010--Hb_003121_020 Hb_010839_070 Hb_010839_070 Hb_084495_010--Hb_010839_070 Hb_000640_270 Hb_000640_270 Hb_084495_010--Hb_000640_270 Hb_000407_110 Hb_000407_110 Hb_084495_010--Hb_000407_110 Hb_099198_010--Hb_003121_020 Hb_099198_010--Hb_010839_070 Hb_099198_010--Hb_000407_110 Hb_001652_050 Hb_001652_050 Hb_099198_010--Hb_001652_050 Hb_003121_020--Hb_010839_070 Hb_001571_010 Hb_001571_010 Hb_003121_020--Hb_001571_010 Hb_003121_020--Hb_000640_270 Hb_183700_010--Hb_003581_240 Hb_000813_120 Hb_000813_120 Hb_183700_010--Hb_000813_120 Hb_183700_010--Hb_002766_040 Hb_007735_010 Hb_007735_010 Hb_183700_010--Hb_007735_010 Hb_003010_040 Hb_003010_040 Hb_183700_010--Hb_003010_040 Hb_002766_040--Hb_007735_010 Hb_002553_080 Hb_002553_080 Hb_002766_040--Hb_002553_080 Hb_003085_050 Hb_003085_050 Hb_002766_040--Hb_003085_050 Hb_157122_010 Hb_157122_010 Hb_002766_040--Hb_157122_010 Hb_003581_240--Hb_000813_120 Hb_007483_030 Hb_007483_030 Hb_003581_240--Hb_007483_030 Hb_027288_010 Hb_027288_010 Hb_003581_240--Hb_027288_010 Hb_006919_010 Hb_006919_010 Hb_003581_240--Hb_006919_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0554111 0.023338 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.179066 0

CAGE analysis