Hb_003121_020

Information

Type -
Description -
Location Contig3121: 51024-54274
Sequence    

Annotation

kegg
ID rcu:RCOM_0172310
description Peroxidase 16 precursor, putative (EC:1.11.1.7)
nr
ID AAX84669.1
description secretory peroxidase PX3 [Manihot esculenta]
swissprot
ID Q96522
description Peroxidase 45 OS=Arabidopsis thaliana GN=PER45 PE=1 SV=1
trembl
ID Q52QY2
description Peroxidase OS=Manihot esculenta PE=2 SV=1
Gene Ontology
ID GO:0005576
description peroxidase 16-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33008: 51039-54292
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003121_020 0.0 - - secretory peroxidase PX3 [Manihot esculenta]
2 Hb_084495_010 0.0345943299 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Eucalyptus grandis]
3 Hb_099198_010 0.0517085111 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 isoform X2 [Nicotiana tomentosiformis]
4 Hb_014113_010 0.08599066 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
5 Hb_010839_070 0.0914693706 - - uncharacterized protein LOC100810725 [Glycine max]
6 Hb_001571_010 0.1116730654 - - hypothetical protein JCGZ_15779 [Jatropha curcas]
7 Hb_000640_270 0.1139136822 - - PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase 30 [Jatropha curcas]
8 Hb_000327_300 0.1305660546 - - PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
9 Hb_117464_010 0.1339564955 - - PREDICTED: flavone 3'-O-methyltransferase 1-like [Jatropha curcas]
10 Hb_004586_080 0.1352215677 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
11 Hb_008160_020 0.1398422018 - - PREDICTED: AT-hook motif nuclear-localized protein 23-like isoform X1 [Jatropha curcas]
12 Hb_183700_010 0.1416091428 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_000407_110 0.1419708526 - - ripening-induced ACC oxidase [Carica papaya]
14 Hb_003581_240 0.1462682454 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
15 Hb_071381_010 0.1528084032 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
16 Hb_008080_040 0.1544399159 - - hypothetical protein EUGRSUZ_D00834 [Eucalyptus grandis]
17 Hb_000038_090 0.1582880648 transcription factor TF Family: NAC hypothetical protein POPTR_0002s05820g [Populus trichocarpa]
18 Hb_014387_040 0.1592705056 - - PREDICTED: uncharacterized protein LOC105636953 [Jatropha curcas]
19 Hb_000317_210 0.1593859579 transcription factor TF Family: MYB PREDICTED: transcription factor MYB39 [Jatropha curcas]
20 Hb_007483_030 0.159454275 - - -

Gene co-expression network

sample Hb_003121_020 Hb_003121_020 Hb_084495_010 Hb_084495_010 Hb_003121_020--Hb_084495_010 Hb_099198_010 Hb_099198_010 Hb_003121_020--Hb_099198_010 Hb_014113_010 Hb_014113_010 Hb_003121_020--Hb_014113_010 Hb_010839_070 Hb_010839_070 Hb_003121_020--Hb_010839_070 Hb_001571_010 Hb_001571_010 Hb_003121_020--Hb_001571_010 Hb_000640_270 Hb_000640_270 Hb_003121_020--Hb_000640_270 Hb_084495_010--Hb_099198_010 Hb_084495_010--Hb_014113_010 Hb_084495_010--Hb_010839_070 Hb_084495_010--Hb_000640_270 Hb_000407_110 Hb_000407_110 Hb_084495_010--Hb_000407_110 Hb_099198_010--Hb_014113_010 Hb_099198_010--Hb_010839_070 Hb_099198_010--Hb_000407_110 Hb_001652_050 Hb_001652_050 Hb_099198_010--Hb_001652_050 Hb_183700_010 Hb_183700_010 Hb_014113_010--Hb_183700_010 Hb_002766_040 Hb_002766_040 Hb_014113_010--Hb_002766_040 Hb_003581_240 Hb_003581_240 Hb_014113_010--Hb_003581_240 Hb_010839_070--Hb_000640_270 Hb_117464_010 Hb_117464_010 Hb_010839_070--Hb_117464_010 Hb_008160_020 Hb_008160_020 Hb_010839_070--Hb_008160_020 Hb_010839_070--Hb_001571_010 Hb_071381_010 Hb_071381_010 Hb_010839_070--Hb_071381_010 Hb_001081_020 Hb_001081_020 Hb_010839_070--Hb_001081_020 Hb_001571_010--Hb_071381_010 Hb_001571_010--Hb_117464_010 Hb_001571_010--Hb_008160_020 Hb_001571_010--Hb_000640_270 Hb_000640_270--Hb_117464_010 Hb_000640_270--Hb_008160_020 Hb_000640_270--Hb_001081_020 Hb_000640_270--Hb_071381_010 Hb_039342_030 Hb_039342_030 Hb_000640_270--Hb_039342_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.127256 0.102612 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.681834 0

CAGE analysis