Hb_008160_020

Information

Type -
Description -
Location Contig8160: 19722-20621
Sequence    

Annotation

kegg
ID rcu:RCOM_0864900
description ESC, putative
nr
ID XP_012089628.1
description PREDICTED: AT-hook motif nuclear-localized protein 23-like isoform X1 [Jatropha curcas]
swissprot
ID O23620
description AT-hook motif nuclear-localized protein 23 OS=Arabidopsis thaliana GN=AHL23 PE=1 SV=1
trembl
ID A0A067JGC9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01738 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding protein escarola

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008160_020 0.0 - - PREDICTED: AT-hook motif nuclear-localized protein 23-like isoform X1 [Jatropha curcas]
2 Hb_117464_010 0.0066254961 - - PREDICTED: flavone 3'-O-methyltransferase 1-like [Jatropha curcas]
3 Hb_001081_020 0.0378745486 - - Cytochrome P450 76C2 [Triticum urartu]
4 Hb_000640_270 0.0385176728 - - PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase 30 [Jatropha curcas]
5 Hb_071381_010 0.0536954604 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
6 Hb_010839_070 0.0541846275 - - uncharacterized protein LOC100810725 [Glycine max]
7 Hb_039342_030 0.0891644345 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006196_020 0.0992962954 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100-like [Populus euphratica]
9 Hb_001571_010 0.1022865982 - - hypothetical protein JCGZ_15779 [Jatropha curcas]
10 Hb_000317_210 0.1135629362 transcription factor TF Family: MYB PREDICTED: transcription factor MYB39 [Jatropha curcas]
11 Hb_000813_120 0.1147808816 - - PREDICTED: serine carboxypeptidase-like 18 [Tarenaya hassleriana]
12 Hb_005747_020 0.1198097792 - - bacterial-induced peroxidase [Gossypium schwendimanii]
13 Hb_000405_040 0.1202205808 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
14 Hb_003010_040 0.1224600007 - - hypothetical protein AALP_AA7G248200 [Arabis alpina]
15 Hb_016172_010 0.1234684284 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
16 Hb_000160_230 0.1246793968 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
17 Hb_001047_250 0.1249815042 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
18 Hb_042664_010 0.1250368096 - - hypothetical protein POPTR_0001s07640g, partial [Populus trichocarpa]
19 Hb_001114_290 0.1266975242 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005747_040 0.1272850529 - - PREDICTED: peroxidase N1-like, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_008160_020 Hb_008160_020 Hb_117464_010 Hb_117464_010 Hb_008160_020--Hb_117464_010 Hb_001081_020 Hb_001081_020 Hb_008160_020--Hb_001081_020 Hb_000640_270 Hb_000640_270 Hb_008160_020--Hb_000640_270 Hb_071381_010 Hb_071381_010 Hb_008160_020--Hb_071381_010 Hb_010839_070 Hb_010839_070 Hb_008160_020--Hb_010839_070 Hb_039342_030 Hb_039342_030 Hb_008160_020--Hb_039342_030 Hb_117464_010--Hb_000640_270 Hb_117464_010--Hb_001081_020 Hb_117464_010--Hb_010839_070 Hb_117464_010--Hb_071381_010 Hb_117464_010--Hb_039342_030 Hb_001081_020--Hb_000640_270 Hb_001081_020--Hb_071381_010 Hb_006196_020 Hb_006196_020 Hb_001081_020--Hb_006196_020 Hb_001081_020--Hb_010839_070 Hb_000640_270--Hb_010839_070 Hb_000640_270--Hb_071381_010 Hb_000640_270--Hb_039342_030 Hb_071381_010--Hb_010839_070 Hb_001571_010 Hb_001571_010 Hb_071381_010--Hb_001571_010 Hb_000405_040 Hb_000405_040 Hb_071381_010--Hb_000405_040 Hb_010839_070--Hb_001571_010 Hb_016172_010 Hb_016172_010 Hb_039342_030--Hb_016172_010 Hb_039342_030--Hb_006196_020 Hb_008705_070 Hb_008705_070 Hb_039342_030--Hb_008705_070 Hb_042664_010 Hb_042664_010 Hb_039342_030--Hb_042664_010 Hb_002615_050 Hb_002615_050 Hb_039342_030--Hb_002615_050 Hb_000160_230 Hb_000160_230 Hb_039342_030--Hb_000160_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.16043 0.0400797 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.06472 0

CAGE analysis